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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Thu, 02 Feb 2023 02:28:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61220 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61220@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61220-submit@debbugs.gnu.org id=B61220.16753048489189 (code B ref 61220); Thu, 02 Feb 2023 02:28:05 +0000 Received: (at 61220) by debbugs.gnu.org; 2 Feb 2023 02:27:28 +0000 Received: from localhost ([127.0.0.1]:60220 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNPJw-0002O2-21 for submit@debbugs.gnu.org; Wed, 01 Feb 2023 21:27:28 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:46089) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNPJt-0002MQ-Nl for 61220@debbugs.gnu.org; Wed, 01 Feb 2023 21:27:26 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1675304837; x=1677119238; bh=H9wTYpTp2GeWztBtaQjhv7Cnl9V0yc0j0BnjQ5E2jvw=; b=KPtTUXv4b/X7 1dh/wP6Zu3T8Xzrw+Eg392tbC/3eMdpixomlwvKZHnxjy34eLt0pNkGPyAZaL42e x3BuLQPVQLHSYqvGSJJLmljx4CEG5WI3Oi+Y4VGiu3nDP1h1FfHdjZGK/UZKa/ee ux/IszK28nljsuq7nQ1eafbqEyx9+60= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id D1C951606B6 for <61220@debbugs.gnu.org>; Thu, 2 Feb 2023 03:27:17 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Thu, 2 Feb 2023 03:27:12 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Thu, 2 Feb 2023 03:26:56 +0100 Message-ID: <20230202022657.67003-9-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de> References: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27422.004 X-TM-AS-Result: No-10-0.740400-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6HlDQRrnQLaUXjfR3d0weRtodkNYFbOrOvqA Jrx96r11yf070dvqMr0t6NL8M7oHYb6wZx1ul0pw8xwCU4LSqsAseQVcTRnF2lwV2iaAfSWcURS Scn+QSXmVV1G+Ck2l7+gtHj7OwNO22utO5qEfOUdxkmk6txqjt2gT+QK371ItOXVqyfFDszCqza ehs+PGzCdrWYFwUZzQokAkCDRkWQ6Qy/TwOziEdzbkkltTuhO3dxXpyzvPkUHQJ88ZHP8DjvmJf 6uotZp79ZjtYmCyQ6k+HGwSCjLh6vuvB6gAgryg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.740400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27422.004 X-TM-SNTS-SMTP: B7150F323F58ABC6C600E320FC57F5AD85256772F766AD4AB04A34BCF66BB0ED2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-beadarraysnp): New variable. --- gnu/packages/bioconductor.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 07207ebc38..c509dffb4c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -17081,6 +17081,26 @@ (define-public r-beachmat matrices.") (license license:gpl3))) +(define-public r-beadarraysnp + (package + (name "r-beadarraysnp") + (version "1.64.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "beadarraySNP" version)) + (sha256 + (base32 "06hy89pclbyxjw5yf5i9bc3wr789b9pmhd9sdchgljlijs9vcj6g")))) + (properties `((upstream-name . "beadarraySNP"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-quantsmooth)) + (home-page "https://bioconductor.org/packages/beadarraySNP") + (synopsis "Normalization and reporting of Illumina SNP bead arrays") + (description + "This package is importing data from Illumina SNP experiments and it performs +copy number calculations and reports.") + (license license:gpl2))) + ;; This package includes files that have been taken from kentutils. Some ;; parts of kentutils are not released under a free license, but this package ;; only uses files that are also found in the free parts of kentutils.