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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Thu, 02 Feb 2023 02:28:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61220 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61220@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61220-submit@debbugs.gnu.org id=B61220.16753048489181 (code B ref 61220); Thu, 02 Feb 2023 02:28:04 +0000 Received: (at 61220) by debbugs.gnu.org; 2 Feb 2023 02:27:28 +0000 Received: from localhost ([127.0.0.1]:60218 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNPJv-0002Nv-KW for submit@debbugs.gnu.org; Wed, 01 Feb 2023 21:27:28 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:58671) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNPJt-0002MP-NI for 61220@debbugs.gnu.org; Wed, 01 Feb 2023 21:27:26 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1675304837; x=1677119238; bh=Gv81YdwKSbu+bhP05cfVMLJprTOjO9ZUgw7cZck+614=; b=eJ8tBXNp43ja ohZFGaej6Ph5UChkZnI1IJLMU9/KzueWfEfYyc9hzIM3LRgpEKheYgPEU10sKeIh gG3rPmoQGRRgyXsVipV45VAyysKvE3kGyPA83niX208hmR2h0Yl++EYHLEJkprq6 ui6v306aZCzvQ9MT5x/TnTmp+2FUvO8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 12EFC1606AA for <61220@debbugs.gnu.org>; Thu, 2 Feb 2023 03:27:17 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Thu, 2 Feb 2023 03:27:12 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Thu, 2 Feb 2023 03:26:55 +0100 Message-ID: <20230202022657.67003-8-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de> References: <20230202022657.67003-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27422.004 X-TM-AS-Result: No-10--1.043800-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkENA3 SZ3aWimvnMBQUHFOVS/uNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIKY5ZGw7wyeHOSL mthZG++aS9TBaifEV6fgtOgp2d5rv+DGmV2RMPUIU7OE9fcKa8aCDl9vXDTLXgSsbX1LRNK2YDT IhMw3OOX0tCKdnhB589yM15V5aWpj6C0ePs7A07ba607moR85Rjr+1pFkLq9h6iEk6WgoxwQvXX Mx3+ivg1s+1Bsl4kY18KBjiMKQxpmYPAglvi9f2Taqfl33JzaLQ59nw4RyHh6OL50Z2t+FPdAnz xkc/wOO+Yl/q6i1mnv1mO1iYLJDqT4cbBIKMuHq+68HqACCvKA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.043800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27422.004 X-TM-SNTS-SMTP: D4D5018E87A578B51A05C6B91AE68B7230071311CBFC3879029078FCA29311EB2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-quantsmooth): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bce8319dcb..07207ebc38 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8738,6 +8738,33 @@ (define-public r-oligo Affymetrix (CEL files) and NimbleGen arrays (XYS files).") (license license:lgpl2.0+))) +(define-public r-quantsmooth + (package + (name "r-quantsmooth") + (version "1.64.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "quantsmooth" version)) + (sha256 + (base32 "1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp")))) + (properties `((upstream-name . "quantsmooth"))) + (build-system r-build-system) + (propagated-inputs (list r-quantreg)) + (home-page "https://bioconductor.org/packages/quantsmooth") + (synopsis "Quantile smoothing and genomic visualization of array data") + (description + "This package implements quantile smoothing. It contains a dataset used to +produce human chromosomal ideograms for plotting purposes and a collection of +arrays that contains data of chromosome 14 of 3 colorectal tumors. The package +provides functions for painting chromosomal icons, chromosme or chromosomal +idiogram and other types of plots. Quantsmooth offers options like converting +chromosomal ids to their numeric form, retrieving the human chromosomal length +from NCBI data, retrieving regions of interest in a vector of intensities using +quantile smoothing, determining cytoband position based on the location of the +probe, and other useful tools.") + (license license:gpl2))) + (define-public r-qvalue (package (name "r-qvalue")