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(license license:bsd-3))) +(define-public python-metaphlan + (package + (name "python-metaphlan") + (version "4.0.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "MetaPhlAn" version)) + (sha256 + (base32 + "1jw29m8p8bcwn4q5qvh8s96qlgqv1kaizbmm87jk55f34k1y3y8a")))) + (build-system python-build-system) + (arguments + (list + #:tests? #f)) ;pypi no tests + (propagated-inputs + (list python-biom-format + python-biopython + python-cmseq + python-dendropy + python-h5py + python-hclust2 + python-numpy + python-pandas + python-phylophlan + python-pysam + python-requests + python-scipy)) + (home-page "http://github.com/biobakery/MetaPhlAn/") + (synopsis "Metagenomic phylogenetic analysis") + (description + "MetaPhlAn is a computational tool for profiling the composition of microbial +communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing +data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, +it is now possible to perform accurate strain-level microbial profiling.") + (license license:expat))) + (define-public python-multivelo (package (name "python-multivelo")