From patchwork Sun Jan 22 00:49:49 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 46330 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5EBD027BBF1; Sun, 22 Jan 2023 00:51:31 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0F9B227BBED for ; Sun, 22 Jan 2023 00:51:29 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pJOZf-0001be-1F; Sat, 21 Jan 2023 19:51:07 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pJOZa-0001aR-T1 for guix-patches@gnu.org; Sat, 21 Jan 2023 19:51:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pJOZa-0004vc-Kw for guix-patches@gnu.org; Sat, 21 Jan 2023 19:51:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pJOZa-0000it-6m; Sat, 21 Jan 2023 19:51:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#60997] [PATCH 2/4] gnu: Add python-hclust2. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Sun, 22 Jan 2023 00:51:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 60997 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <60997@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 60997-submit@debbugs.gnu.org id=B60997.16743486172700 (code B ref 60997); Sun, 22 Jan 2023 00:51:02 +0000 Received: (at 60997) by debbugs.gnu.org; 22 Jan 2023 00:50:17 +0000 Received: from localhost ([127.0.0.1]:50096 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pJOYq-0000hT-LU for submit@debbugs.gnu.org; Sat, 21 Jan 2023 19:50:17 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:49549) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pJOYo-0000gz-Kg for 60997@debbugs.gnu.org; Sat, 21 Jan 2023 19:50:15 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1674348608; x=1676163009; bh=Nf6oksiBeSGVK65NQcG5M7yDIfZOUxOS/pEoJbcVVS8=; b=N0kFygMJ4l++ sla8nzcqgK8bUX/U5eYYGYLYAJk5MsbSE8jh5d9BefRhiEEgcVGqhQHL6y1JmcqO 1IyqOTbuNBk+kq5NGpkoerfYeXtPuWeyIYlxW/ZOF1e6UJDLr/SUzXzRY36qHRf8 ZmKcWS7ghoxT9jt3ugE6XyDGnjRX5Yc= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 6A428300627 for <60997@debbugs.gnu.org>; Sun, 22 Jan 2023 01:50:08 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Sun, 22 Jan 2023 01:50:02 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sun, 22 Jan 2023 01:49:49 +0100 Message-ID: <20230122004951.119277-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230122004951.119277-1-madalinionel.patrascu@mdc-berlin.de> References: <20230122004951.119277-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27400.003 X-TM-AS-Result: No-10--5.081200-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJN6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXb1veicsGbWruNT8xdcEnQwE+dA3RWUSvutvHF25zoU8xVUWGXs3C80JZ5MDd4/kUssb EkSX6c0kV5MniPWJBrU0Tjw561BCIxVDWOuzmzZI7lKkz03w0630tCKdnhB58I/9UW5M5dRMQpr Z/7WnuveTCMddcL/gjymsk/wUE4hpau/Gkfjk+cHaPMzQ1g8/CmQ7rVt1ovvbgrZu5D215bUzVm 4+JPhSp X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.081200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27400.003 X-TM-SNTS-SMTP: 188361D524DE3ED5CF3B060DA68204EA61453ED706E4BB700AC99525AA82BC6C2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-hclust2): New variable. --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4e7bc07a5f..bf01c9c7e4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1041,6 +1041,32 @@ (define-public python-cmseq and sequence consensus.") (license license:expat))) +(define-public python-hclust2 + (package + (name "python-hclust2") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "hclust2" version)) + (sha256 + (base32 + "0v89n2g42d7jhgfs8glf06apgxx6aswp3mfisgnhm518cv8z2rwn")))) + (build-system python-build-system) + (arguments + (list + #:tests? #f)) ;;pypi no tests + (propagated-inputs + (list python-matplotlib + python-numpy + python-pandas + python-scipy)) + (home-page "http://github.com/SegataLab/hclust2/") + (synopsis "Plotting heat-maps for publications") + (description + "Hclust2 is a handy tool for plotting heat-maps with several useful options +to produce high quality figures that can be used in publication") + (license license:expat))) + (define-public python-htsget (package (name "python-htsget")