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(license license:bsd-3))) +(define-public python-cmseq + (package + (name "python-cmseq") + (version "1.0.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "CMSeq" version)) + (sha256 + (base32 + "0p6a99c299m5wi2z57dgqz52m1z3nfr8mv7kdnk2jvl2p9nql0wk")))) + (build-system python-build-system) + (arguments + (list #:tests? #f )) ;pypi no tests + (propagated-inputs + (list python-bcbio-gff + python-biopython + python-numpy + python-pandas + python-pysam + python-scipy)) + (home-page "http://github.com/SegataLab/cmseq/") + (synopsis "Set of utilities on sequences and BAM files") + (description + "CMSeq is a set of commands to provide an interface to .bam files for coverage +and sequence consensus.") + (license license:expat))) + (define-public python-htsget (package (name "python-htsget")