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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Tue, 17 Jan 2023 13:19:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 60878 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <60878@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 60878-submit@debbugs.gnu.org id=B60878.167396153329330 (code B ref 60878); Tue, 17 Jan 2023 13:19:02 +0000 Received: (at 60878) by debbugs.gnu.org; 17 Jan 2023 13:18:53 +0000 Received: from localhost ([127.0.0.1]:36100 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pHlrY-0007cz-IF for submit@debbugs.gnu.org; Tue, 17 Jan 2023 08:18:52 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:52249) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pHlrT-0007cd-5m for 60878@debbugs.gnu.org; Tue, 17 Jan 2023 08:18:50 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1673961520; x=1675775921; bh=eHj94x3kMsRAK8p/bm7RYVHWNvAIk+x23fYr7Lh9vYg=; b=bPrLV9X5MIgC Tw0sY+G43omga7a5/x4M/kzDOc4GpYkYdJMlO+WjHaT1vcF8F/vV0rHVtqqaaRF4 pIPBUnETYAaz4GKR355tm+jXFNbwXBJA2K6wI1UhdJkyBBvtkyOKlz38EW6xeLIs E6BnqsnJ1t1YRnvj0/uxjC5Ghp4pea8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id A1A1216010D for <60878@debbugs.gnu.org>; Tue, 17 Jan 2023 14:18:40 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Tue, 17 Jan 2023 14:18:39 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 17 Jan 2023 14:18:23 +0100 Message-ID: <20230117131823.55318-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20230117131823.55318-1-madalinionel.patrascu@mdc-berlin.de> References: <20230117131823.55318-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27390.007 X-TM-AS-Result: No-10--4.747400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJO6ZW5Sc5wvHgrcxrzwsv5uwTlc9CcHMZerwqxtE531VNnf JrUSEbFD+7QmOJudfuPuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIG1/OiWPM9c7cmM mAcpqutOjKgB/G5ipU7juWvhUjDfwe1Ws2JcOmw4vYlQ7uxD3/IqPnoYdELInlwV2iaAfSWcURS Scn+QSXt0H8LFZNFG7doMssNsUwYUF728hd3d10CP6v829Hz134Owm3fCfdbyvv860WmvahfKLo beqpxNhdExmvumdxe20ZxsO5qzAaMNzuez3p1Lww0e9zy7qCqzHpeHdXLjLb473WzsXAufzELZr sYgA6obyh3JNelCjdRkfAFx3Dn4y X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.747400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27390.007 X-TM-SNTS-SMTP: 5F93AB33F5B9F3FCC468CBC1A172B12BF2E9886881DF7AF5664897A09146E7CC2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-anvil): New variable. --- gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ca236bcf75..35aed4b62c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2443,6 +2443,47 @@ (define-public r-animalcules to understand their data better and discover new insights.") (license license:artistic2.0))) +(define-public r-anvil + (package + (name "r-anvil") + (version "1.10.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AnVIL" version)) + (sha256 + (base32 + "0iqsffkrxv28g9cddx2w05f2dbscwxhh6bpizwa8xaxhvn5bcpsv")))) + (properties `((upstream-name . "AnVIL"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocmanager + r-dplyr + r-dt + r-futile-logger + r-htmltools + r-httr + r-jsonlite + r-miniui + r-rapiclient + r-rlang + r-shiny + r-tibble + r-tidyr + r-tidyselect)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AnVIL") + (synopsis "Provides access to AnVIL, Terra, Leonardo and other projects") + (description + "The AnVIL is a cloud computing resource developed in part by the National +Human Genome Research Institute. The AnVIL package provides end-user and developer +functionality. For the end-user, AnVIL provides fast binary package installation, +utitlities for working with Terra/AnVIL table and data resources, and convenient +functions for file movement to and from Google cloud storage. For developers, +AnVIL provides programatic access to the Terra, Leonardo, Rawls, Dockstore, and +Gen3 RESTful programming interface, including helper functions to transform JSON +responses to formats more amenable to manipulation in R.") + (license license:artistic2.0))) + (define-public r-aldex2 (package (name "r-aldex2")