From patchwork Mon Dec 12 14:27:03 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Ricardo Wurmus X-Patchwork-Id: 45198 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4BFAD27BBE9; Mon, 12 Dec 2022 14:29:04 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2825C27BBEC for ; Mon, 12 Dec 2022 14:29:01 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1p4jmw-0005iD-BR; Mon, 12 Dec 2022 09:28:14 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1p4jmn-0005Vg-FM for guix-patches@gnu.org; Mon, 12 Dec 2022 09:28:08 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1p4jmn-0006D0-6V for guix-patches@gnu.org; Mon, 12 Dec 2022 09:28:05 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1p4jmn-0007V2-0i for guix-patches@gnu.org; Mon, 12 Dec 2022 09:28:05 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#60009] [PATCH 05/18] gnu: python-pygenometracks: Update to 3.5. Resent-From: Ricardo Wurmus Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 12 Dec 2022 14:28:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 60009 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: 60009@debbugs.gnu.org Cc: Ricardo Wurmus Received: via spool by 60009-submit@debbugs.gnu.org id=B60009.167085526228700 (code B ref 60009); Mon, 12 Dec 2022 14:28:04 +0000 Received: (at 60009) by debbugs.gnu.org; 12 Dec 2022 14:27:42 +0000 Received: from localhost ([127.0.0.1]:53273 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p4jmQ-0007Sq-DC for submit@debbugs.gnu.org; Mon, 12 Dec 2022 09:27:42 -0500 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21057) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p4jmM-0007SX-Jf for 60009@debbugs.gnu.org; Mon, 12 Dec 2022 09:27:39 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1670855254; cv=none; d=zohomail.com; s=zohoarc; b=lwZCDjTsdm+1Ng9rZURHYja9PggiBU5Tl6/ZYW9L58p6WHvv4z9WBQqEOU8ZrAWaXCTi9yweqNLtz6NIKsj9t+SQ8ywCm5h2WTYdye5qcyIxK143QtaeE9c/vtN97vk7kdu4ikHTjPj3JuBmkC64GOuc2p5PWKKgj7TnJRQoalI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1670855254; h=Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=vnALGN4v5ZdreRDCUNhA7ELbO3Lg8Dw9+zlcBOE0/S4=; b=efWe3sMh+LJtnzdwZFsR0Ffta4AGyaUvfHvQ7L0fMgcPTComiPYM7wYabVHW8IZqMg5IXO+uZeXwl9djvUuzcKayLFydeH67LILGPeXa0aXVtimG76c6pnrWNe+cBhMee3YfW+1Da9JLJAcGmhG6zIFZZb0BKJEstWxp9skYuvw= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1670855254; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:Message-Id:Message-Id:In-Reply-To:References:MIME-Version:Content-Transfer-Encoding:Reply-To; bh=vnALGN4v5ZdreRDCUNhA7ELbO3Lg8Dw9+zlcBOE0/S4=; b=KYN2oWQpGdF9T2pu9QQ/ZQBM1ibrXYUKhC3bCN6UjRcU/udMWl2IDGSNMkdfqKSw y6NgGgdva6RpyOuzn0aRshB2ZrapOuafdKgba0wAhdW9rIsO05D6boF2DxtHu52xIyI MtPR2Wp9jtxwbWN1j+TzLROYzxQnLyuVYy38Ii4A= Received: from localhost (48-111-142-46.pool.kielnet.net [46.142.111.48]) by mx.zohomail.com with SMTPS id 1670855253329861.4200994581539; Mon, 12 Dec 2022 06:27:33 -0800 (PST) From: Ricardo Wurmus Date: Mon, 12 Dec 2022 15:27:03 +0100 Message-Id: <20221212142716.9460-5-rekado@elephly.net> X-Mailer: git-send-email 2.36.1 In-Reply-To: <20221212142716.9460-1-rekado@elephly.net> References: <87h6y03dkr.fsf@elephly.net> <20221212142716.9460-1-rekado@elephly.net> MIME-Version: 1.0 X-ZohoMailClient: External X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.5. [build-system]: Use pyproject-build-system. [arguments]: Quote phases instead of full list of arguments; remove trailing #T from build phase. --- gnu/packages/bioinformatics.scm | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 82801e7eeb..e6a8789ea6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13466,25 +13466,25 @@ (define-public python-hicexplorer (define-public python-pygenometracks (package (name "python-pygenometracks") - (version "3.3") + (version "3.5") (source (origin (method url-fetch) (uri (pypi-uri "pyGenomeTracks" version)) (sha256 (base32 - "16laa0wnf4qn9fb9ych4w1vqhqwjss70v0y0f6wp4gwqfrlgac0f")))) - (build-system python-build-system) + "1l7smg2gc1vm2181lzmdnywb11gp6s6z6j444dbsigv65car8z8p")))) + (build-system pyproject-build-system) (arguments - `(#:tests? #f ; there are none - #:phases - (modify-phases %standard-phases + (list + #:tests? #f ;there are none + #:phases + '(modify-phases %standard-phases (add-after 'unpack 'relax-requirements (lambda _ (substitute* "setup.py" (("matplotlib ==3.1.1") - "matplotlib >=3.1.1")) - #t))))) + "matplotlib >=3.1.1"))))))) (propagated-inputs (list python-future python-gffutils