From patchwork Mon Dec 12 14:27:15 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Ricardo Wurmus X-Patchwork-Id: 45209 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id BD39527BBEC; Mon, 12 Dec 2022 14:29:58 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 3471927BBE9 for ; Mon, 12 Dec 2022 14:29:58 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1p4jnp-0006ra-Ho; Mon, 12 Dec 2022 09:29:09 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1p4jnj-0006lO-Sg for guix-patches@gnu.org; Mon, 12 Dec 2022 09:29:07 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1p4jnj-0006TR-J1 for guix-patches@gnu.org; Mon, 12 Dec 2022 09:29:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1p4jnj-0007Xl-EL for guix-patches@gnu.org; Mon, 12 Dec 2022 09:29:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#60009] [PATCH 17/18] gnu: seqmagick: Update to 0.8.4. Resent-From: Ricardo Wurmus Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 12 Dec 2022 14:29:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 60009 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: 60009@debbugs.gnu.org Cc: Ricardo Wurmus Received: via spool by 60009-submit@debbugs.gnu.org id=B60009.167085529828955 (code B ref 60009); Mon, 12 Dec 2022 14:29:03 +0000 Received: (at 60009) by debbugs.gnu.org; 12 Dec 2022 14:28:18 +0000 Received: from localhost ([127.0.0.1]:53323 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p4jn0-0007Ww-6h for submit@debbugs.gnu.org; Mon, 12 Dec 2022 09:28:18 -0500 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21091) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p4jmx-0007Wi-1j for 60009@debbugs.gnu.org; Mon, 12 Dec 2022 09:28:15 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1670855292; cv=none; d=zohomail.com; s=zohoarc; b=Tl6GHNdLprtHj9Kg2g51QFnXlpQnbHERpv6/bRTC7+wXqMdpcmcsC4JIKpFNMZC3usUGT6kmQ7f0FGPSR/5uR9E0cyrHZlJihSqY60RtxhzJnBYigQEKq+oDNrX4Z5dBgEpcQ7eGg3rfxpM0tIRuvAFjPfgimfloIGW89WxY3nI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1670855292; h=Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=sO2ZcN5oS+uAw9cDho6kYlxQtiMWxHMzZo++KqSUpiQ=; b=YDPELWCt6QdZk8NgcZDWnZ27cDqucxnux6ogKuAEzO9O04uISFRzEdSBcBzeitdtWsbd6S1fj+ceEVfhu3wEfz94y0BBKeCTA8ZMg2EHmmfQ0oXVDWgABb/8XsDHCqYDtFYcBulOTrKuV49/Pn4228azUXzGCO7ESYmgHGM9wzc= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1670855292; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:Message-Id:Message-Id:In-Reply-To:References:MIME-Version:Content-Transfer-Encoding:Reply-To; bh=sO2ZcN5oS+uAw9cDho6kYlxQtiMWxHMzZo++KqSUpiQ=; b=WfhkfeId64zjdZwKGLDiTSYhuP+e9fxViT+w/k721+OlvMU/HvNGLZiNfO/kvXXH iW+2r6ex0cI2o9tXEJPM+IN70/OFIYahH5D88NBQ6WaKukeMkN3swI9XNAPlP7GBZm/ 6B3+c6msNxKJD95Cm7QQd1/CiIGfsVOpPjjzG4P0= Received: from localhost (48-111-142-46.pool.kielnet.net [46.142.111.48]) by mx.zohomail.com with SMTPS id 1670855291398117.28704174865652; Mon, 12 Dec 2022 06:28:11 -0800 (PST) From: Ricardo Wurmus Date: Mon, 12 Dec 2022 15:27:15 +0100 Message-Id: <20221212142716.9460-17-rekado@elephly.net> X-Mailer: git-send-email 2.36.1 In-Reply-To: <20221212142716.9460-1-rekado@elephly.net> References: <87h6y03dkr.fsf@elephly.net> <20221212142716.9460-1-rekado@elephly.net> MIME-Version: 1.0 X-ZohoMailClient: External X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.4. [build-system]: Use pyproject-build-system. [inputs]: Add python-pygtrie. [native-inputs]: Replace python-nose with python-pytest. --- gnu/packages/bioinformatics.scm | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4044ff625e..e8a8ddc361 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6945,19 +6945,19 @@ (define-public seqan-1 (define-public seqmagick (package (name "seqmagick") - (version "0.8.0") + (version "0.8.4") (source (origin (method url-fetch) (uri (pypi-uri "seqmagick" version)) (sha256 (base32 - "0pf98da7i59q47gwrbx0wjk6xlvbybiwphw80w7h4ydjj0579a2b")))) - (build-system python-build-system) + "0c6skyig8fyylnbj4597pjj9h0dn36rkxrhwd34yrsc6k6f7r8a0")))) + (build-system pyproject-build-system) (inputs - (list python-biopython)) + (list python-biopython python-pygtrie)) (native-inputs - (list python-nose)) + (list python-pytest)) (home-page "https://github.com/fhcrc/seqmagick") (synopsis "Tools for converting and modifying sequence files") (description