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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Thu, 08 Dec 2022 21:14:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 59911 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <59911@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 59911-submit@debbugs.gnu.org id=B59911.167053403814452 (code B ref 59911); Thu, 08 Dec 2022 21:14:04 +0000 Received: (at 59911) by debbugs.gnu.org; 8 Dec 2022 21:13:58 +0000 Received: from localhost ([127.0.0.1]:59140 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p3ODN-0003kx-VW for submit@debbugs.gnu.org; Thu, 08 Dec 2022 16:13:58 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:57025) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p3ODK-0003ju-EV for 59911@debbugs.gnu.org; Thu, 08 Dec 2022 16:13:54 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1670534025; x=1672348426; bh=vTBvBBaapPAksnAeN7v4mEagJ8as7f+5cIkj+kKXqjA=; b=ffoaKeZIUoNg 3AI6IokzM+OCprLn8xtOTdrG4c41E5WcHus/zFg1ZN4Bg+UVAzffqjptbk7CZA8q OkrRYOb17WLw1fB5bhcFyKI/+9mVU+O8y/wpFDbFYl4Ftp+4z/TRcSivXpwzHlvB zUDnD/WE+F0NnusoYY8XUGeUyJWwO0o= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 7B35B160568 for <59911@debbugs.gnu.org>; Thu, 8 Dec 2022 22:13:45 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.16; Thu, 8 Dec 2022 22:13:40 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Thu, 8 Dec 2022 22:13:22 +0100 Message-ID: <20221208211322.28459-7-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20221208211322.28459-1-madalinionel.patrascu@mdc-berlin.de> References: <20221208211322.28459-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27312.003 X-TM-AS-Result: No-10--8.359100-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEG8R qAsgLeLoRRa406V/YwyBUGewL2YXt/211Ty3YIoAwLYk+NSxc5r4qCLIu0mtILqRTffgJkSxd93 A76AVNsBkByy7nKWXTrnGs6v1BUA0VkqoT5RgfN+OtWfhyZ77DlfRUrB5i5knU72YOAMDJjieAi CmPx4NwGmRqNBHmBve38LauI2fxt4qtq5d3cxkNZd/mwLf2BVUd02DHlJhpixiHjoTybkJ+Tk1n xPOQG1HwCLEd6410rhLDBwYotNgRw== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.359100-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27312.003 X-TM-SNTS-SMTP: 328F87FE5DCB3D4163B19BC3A49552DA0C5AB76676254C69A859C905E818485E2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-wpm): New variable. --- gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c62c5970b8..21b69cab01 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12244,6 +12244,48 @@ (define-public r-wppi scores and a path search algorithm.") (license license:expat))) +(define-public r-wpm + (package + (name "r-wpm") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "wpm" version)) + (sha256 + (base32 + "05zpj0i4741xn1g0yhkq3mg9zjppfryrfc47pxnys9bjfij0az52")))) + (properties `((upstream-name . "wpm"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-cli + r-config + r-dplyr + r-dt + r-ggplot2 + r-golem + r-logging + r-rcolorbrewer + r-rlang + r-shiny + r-shinycustomloader + r-shinydashboard + r-shinywidgets + r-stringr + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/HelBor/wpm") + (synopsis "Generating well plate maker") + (description + "The @acronym{WPM, Well-Plate Maker} is a Shiny application deployed as an +R package. Functions for a command-line/script use are available. The WPM allows +users to generate well plate maps to carry out their experiments while improving +the handling of batch effects. In particular, it helps controlling the \"plate +effect\" thanks to its ability to randomize samples over multiple well plates. +The algorithm for placing the samples is inspired by the backtracking algorithm: +the samples are placed at random while respecting specific spatial constraints.") + (license license:artistic2.0))) + (define-public r-wrench (package (name "r-wrench")