From patchwork Sat Dec 3 05:08:29 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Antero Mejr X-Patchwork-Id: 45024 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B794927BBEC; Sat, 3 Dec 2022 05:10:20 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 3BD6F27BBEB for ; Sat, 3 Dec 2022 05:10:17 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1p1Kmq-000147-GD; Sat, 03 Dec 2022 00:10:04 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1p1Kmp-00013y-1t for guix-patches@gnu.org; Sat, 03 Dec 2022 00:10:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1p1Kmo-0004YQ-PR for guix-patches@gnu.org; Sat, 03 Dec 2022 00:10:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1p1Kmn-0004RO-N9; Sat, 03 Dec 2022 00:10:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#59792] [PATCH] gnu: Add python-pydicom. 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Supersedes #55989. gnu/packages/python-science.scm | 46 +++++++++++++++++++++++++++++++++ 1 file changed, 46 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 52fe1460bb..00bba25a4a 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -1656,6 +1656,52 @@ (define-public python-vaex-core tabular datasets. This package provides the core modules of Vaex.") (license license:expat))) +(define-public python-pydicom + (package + (name "python-pydicom") + (version "2.3.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pydicom/pydicom") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0q209i2jgwv5z1xhi7frydkplby7jaiz624pjq6vi51wvlmimpf6")))) + (build-system python-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; skip tests using external data + (invoke "pytest" "-vv" "-k" + (string-append + " not TestDataElement" + " and not TestDatasetOverlayArray" + " and not TestReader" + " and not Test_JPEG_LS_Lossless_transfer_syntax" + " and not test_data_manager.py" + " and not test_encaps.py" + " and not test_encoders_pydicom.py" + " and not test_filewriter.py" + " and not test_gdcm_pixel_data.py" + " and not test_handler_util.py" + " and not test_jpeg_ls_pixel_data.py" + " and not test_numpy_pixel_data.py" + " and not test_overlay_np.py" + " and not test_pillow_pixel_data.py" + " and not test_rle_pixel_data.py")))))))) + (native-inputs (list python-pytest)) + (propagated-inputs (list python-numpy python-pillow)) + (home-page "https://github.com/pydicom/pydicom") + (synopsis "Python library for reading and writing DICOM data") + (description "@code{pydicom} is a Python library for reading and writing +DICOM medical image files. It lets developers read, modify and write DICOM data +in a pythonic way.") + (license license:expat))) + ;;; ;;; Avoid adding new packages to the end of this file. To reduce the chances ;;; of a merge conflict, place them above by existing packages with similar