@@ -48,6 +48,7 @@ (define-module (gnu packages bioconductor)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages image)
+ #:use-module (gnu packages java)
#:use-module (gnu packages maths)
#:use-module (gnu packages netpbm)
#:use-module (gnu packages python)
@@ -3051,6 +3052,45 @@ (define-public r-dearseq
set analyses, and can deal with repeated or longitudinal data.")
(license license:gpl2)))
+(define-public r-debcam
+ (package
+ (name "r-debcam")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "debCAM" version))
+ (sha256
+ (base32
+ "1ynz57kkxl8nx80zhh1vhhydqb5n6r9d7p69f0k9nj8rp4hdgng7"))))
+ (properties `((upstream-name . "debCAM")))
+ (build-system r-build-system)
+ (inputs (list openjdk))
+ (propagated-inputs
+ (list r-apcluster
+ r-biobase
+ r-biocparallel
+ r-corpcor
+ r-dmwr2
+ r-geometry
+ r-nmf
+ r-nnls
+ r-pcapp
+ r-rjava
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/debCAM")
+ (synopsis "Deconvolution by convex analysis of mixtures")
+ (description
+ "This package is an R implementation for fully unsupervised deconvolution
+of complex tissues. @code{DebCAM} provides basic functions to perform unsupervised
+deconvolution on mixture expression profiles by @acronym{CAM, Convex Analysis
+of Mixtures} and some auxiliary functions to help understand the subpopulation-
+specific results. It also implements functions to perform supervised deconvolution
+based on prior knowledge of molecular markers, S matrix or A matrix. Combining
+molecular markers from CAM and from prior knowledge can achieve semi-supervised
+deconvolution of mixtures.")
+ (license license:gpl2)))
+
(define-public r-decipher
(package
(name "r-decipher")