@@ -3036,6 +3036,47 @@ (define-public r-dama
microarray data.")
(license license:gpl2+)))
+(define-public r-damefinder
+ (package
+ (name "r-damefinder")
+ (version "1.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DAMEfinder" version))
+ (sha256
+ (base32
+ "123ra94bij0m45j2fzqr7fjipj4ld9kgk0kir1zfdbbd5h8h4mdf"))))
+ (properties `((upstream-name . "DAMEfinder")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocgenerics
+ r-biostrings
+ r-bumphunter
+ r-cowplot
+ r-genomeinfodb
+ r-genomicalignments
+ r-genomicranges
+ r-ggplot2
+ r-iranges
+ r-limma
+ r-plyr
+ r-readr
+ r-reshape2
+ r-rsamtools
+ r-s4vectors
+ r-stringr
+ r-summarizedexperiment
+ r-variantannotation))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/DAMEfinder")
+ (synopsis "Differential allelicly methylated regions")
+ (description
+ "This package offers functionality for taking methtuple or @code{bismark}
+outputs to calculate @acronym{ASM, Allele-Specific Methylation} scores and compute
+@acronym{DAMEs, Differential Allelicly MEthylated regions}. It also offers nice
+visualization of methyl-circle plots.")
+ (license license:expat)))
+
(define-public r-dearseq
(package
(name "r-dearseq")