diff mbox series

[bug#58511] gnu: Add r-tximportdata. X-Debbugs-Cc: rekado@elephly.net

Message ID 20221014111216.1389-1-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#58511] gnu: Add r-tximportdata. X-Debbugs-Cc: rekado@elephly.net | expand

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Commit Message

Mădălin Ionel Patrașcu Oct. 14, 2022, 11:12 a.m. UTC 
* gnu/packages/bioconductor.scm (r-tximportdata): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)


base-commit: 10d429f2fce321d8285684503094694ec3979865

Comments

Ricardo Wurmus Oct. 27, 2022, 1:24 p.m. UTC | #1 
Applied with minor changes to the description.  Thanks!
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ecb60f2e24..bfb773672b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1605,6 +1605,30 @@  (define-public r-tcgabiolinksgui-data
 TCGAbiolinksGUI package.")
     (license license:gpl3)))
 
+(define-public r-tximportdata
+  (package
+    (name "r-tximportdata")
+    (version "1.24.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "tximportData" version
+                                     'experiment))
+              (sha256
+               (base32
+                "0mgbwpybg2xd6x1ijrflmjh5w63qz6ylnzszbbyp437n618m7riy"))))
+    (properties `((upstream-name . "tximportData")))
+    (build-system r-build-system)
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/tximportData")
+    (synopsis "Data for the tximport package")
+    (description
+     "This package provides the output of running various transcript abundance
+quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project.  The
+quantifiers were @code{Cufflinks}, @code{RSEM}, @code{kallisto}, @code{Salmon}
+and @code{Sailfish}.  @code{alevin} example output is also included.")
+    (license license:gpl2+)))
+
+
 
 ;;; Packages