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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 22 Aug 2022 11:27:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 57340 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 57340@debbugs.gnu.org Cc: rekado@elephly.net X-Debbugs-Original-To: X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by submit@debbugs.gnu.org id=B.16611676119978 (code B ref -1); Mon, 22 Aug 2022 11:27:02 +0000 Received: (at submit) by debbugs.gnu.org; 22 Aug 2022 11:26:51 +0000 Received: from localhost ([127.0.0.1]:38137 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQ5Zy-0002as-Ri for submit@debbugs.gnu.org; Mon, 22 Aug 2022 07:26:51 -0400 Received: from lists.gnu.org ([209.51.188.17]:53990) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQ5Zv-0002ak-T0 for submit@debbugs.gnu.org; Mon, 22 Aug 2022 07:26:49 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:60332) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oQ5Zv-0001iK-OD for guix-patches@gnu.org; Mon, 22 Aug 2022 07:26:47 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:37499) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oQ5Zs-0006GM-UR for guix-patches@gnu.org; Mon, 22 Aug 2022 07:26:47 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1661167600; x=1662982001; bh=lJ7nK7dGZ/yVXRS ywUpRxfGciZEdYJrYN/qgA00WAxg=; b=lSAhe08wrp8eQOd+iDsR0/OHfJYqrKS JeZvjMCB88e5T55PQyhsyuHAqD0dowa+ZO7HB8BaIPG8HYbLLNRTtwnbVFlKY+gb R9kTCRscJb7+vRSzqw1hsmY6OrtzAX+NBUe+dr9o0xTcEHBNeMQMfh2MWUjkr+iy 36m0liBGcUIA= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0DEAA300240 for ; Mon, 22 Aug 2022 13:26:39 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.12; Mon, 22 Aug 2022 13:26:39 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 22 Aug 2022 13:26:27 +0200 Message-ID: <20220822112627.32123-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.37.2 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27092.007 X-TM-AS-Result: No-10--6.154400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcOj1LmhIerwYArcxrzwsv5uwTlc9CcHMZerwqxtE531VGb6 PphVtfZgftxOuKmFYcnuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIOfdksK3etFJ35r P8TLPXhR7MSP7SLpuGIek6stLzp1eWi8Qip68NgfdCok3ibXlQeuLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKTpcQTtiHDgW9jOHvog8CCfFlJCWqTg5fS/eZJv7Trifxdem+NvTtl0PhlTbB4g25g== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.154400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27092.007 X-TM-SNTS-SMTP: F3147DF224C2DE3C9880C42731710D818FE1D1709EA7EE621A967E858D6886912002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-organism-dplyr): New variable. --- gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7d2ca413e9..ed9e4df73d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5017,6 +5017,45 @@ (define-public r-mzr previously been used in XCMS.") (license license:artistic2.0))) +(define-public r-organism-dplyr + (package + (name "r-organism-dplyr") + (version "1.24.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Organism.dplyr" version)) + (sha256 + (base32 + "0j29f85d66c45ww3417xx376vpz0mmvga5n7h2cl1sd4h70b55as")))) + (properties `((upstream-name . "Organism.dplyr"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-annotationfilter + r-biocfilecache + r-dbi + r-dbplyr + r-dplyr + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-iranges + r-rlang + r-rsqlite + r-s4vectors + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/Organism.dplyr") + (synopsis "Dplyr-based access to Bioconductor annotation resources") + (description + "This package provides an alternative interface to Bioconductor @code{ +annotation} resources, in particular the gene identifier mapping functionality +of the @code{org} packages (e.g., @code{org.Hs.eg.db}) and the genome coordinate +functionality of the @code{TxDb} packages (e.g., +@code{TxDb.Hsapiens.UCSC.hg38.knownGene}).") + (license license:artistic2.0))) + (define-public r-organismdbi (package (name "r-organismdbi")