diff mbox series

[bug#56280] gnu: Add r-basespacer.

Message ID 20220628151354.3760-1-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#56280] gnu: Add r-basespacer. | expand

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Commit Message

Mădălin Ionel Patrașcu June 28, 2022, 3:13 p.m. UTC 
* gnu/packages/bioconductor.scm (r-basespacer): New variable.
---
 gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)


base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff

Comments

Ricardo Wurmus Oct. 27, 2022, 1:42 p.m. UTC | #1 
Applied with minor changes.  Thank you!
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..51aae2a0f7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,29 @@  (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-basespacer
+  (package
+    (name "r-basespacer")
+    (version "1.40.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BaseSpaceR" version))
+              (sha256
+               (base32
+                "0jyw4pnybsd6ywpaamk5ywkrcib2z48farsnszmwq97zlbmra7fj"))))
+    (properties `((upstream-name . "BaseSpaceR")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-rcurl r-rjsonio))
+    (home-page "https://bioconductor.org/packages/BaseSpaceR")
+    (synopsis "R SDK for BaseSpace RESTful API")
+    (description
+     "This package provides a @code{R} interface to Illumina's BaseSpace cloud
+computing environment, enabling the fast development of data analysis and
+visualisation tools.  Besides providing an easy to use set of tools for
+manipulating the data from BaseSpace, it also facilitates the access to R's
+rich environment of statistical and data analysis open source tools.")
+    (license license:asl2.0)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")