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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-barcodetrackr): New variable. --- gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..dd3d813398 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,48 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-barcodetrackr + (package + (name "r-barcodetrackr") + (version "1.4.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "barcodetrackR" version)) + (sha256 + (base32 + "0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3")))) + (properties `((upstream-name . "barcodetrackR"))) + (build-system r-build-system) + (propagated-inputs + (list r-circlize + r-cowplot + r-dplyr + r-ggdendro + r-ggplot2 + r-ggridges + r-magrittr + r-plyr + r-proxy + r-rcolorbrewer + r-rlang + r-s4vectors + r-scales + r-shiny + r-summarizedexperiment + r-tibble + r-tidyr + r-vegan + r-viridis)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/dunbarlabNIH/barcodetrackR") + (synopsis "Functions for analyzing cellular barcoding data") + (description + "This package @code{barcodetrackR} is developed for the analysis and +visualization of clonal tracking data. The required data is formed by samples +and tag abundances in matrix form. Usually from cellular barcoding experiments, +integration site retrieval analyses, or similar technologies.") + (license license:cc0))) + (define-public r-biocversion (package (name "r-biocversion")