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[bug#56279] gnu: Add r-barcodetrackr.

Message ID 20220628150044.2872-1-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#56279] gnu: Add r-barcodetrackr. | expand

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Commit Message

Mădălin Ionel Patrașcu June 28, 2022, 3 p.m. UTC 
* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
---
 gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)


base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff

Comments

Ricardo Wurmus Oct. 27, 2022, 2:02 p.m. UTC | #1 
Applied with minor changes, thanks!
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..dd3d813398 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,48 @@  (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-barcodetrackr
+  (package
+    (name "r-barcodetrackr")
+    (version "1.4.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "barcodetrackR" version))
+              (sha256
+               (base32
+                "0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3"))))
+    (properties `((upstream-name . "barcodetrackR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-circlize
+           r-cowplot
+           r-dplyr
+           r-ggdendro
+           r-ggplot2
+           r-ggridges
+           r-magrittr
+           r-plyr
+           r-proxy
+           r-rcolorbrewer
+           r-rlang
+           r-s4vectors
+           r-scales
+           r-shiny
+           r-summarizedexperiment
+           r-tibble
+           r-tidyr
+           r-vegan
+           r-viridis))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/dunbarlabNIH/barcodetrackR")
+    (synopsis "Functions for analyzing cellular barcoding data")
+    (description
+     "This package @code{barcodetrackR} is developed for the analysis and
+visualization of clonal tracking data.  The required data is formed by samples
+and tag abundances in matrix form.  Usually from cellular barcoding experiments,
+integration site retrieval analyses, or similar technologies.")
+    (license license:cc0)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")