diff mbox series

[bug#56270] gnu: Add r-banocc.

Message ID 20220627224213.23031-1-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#56270] gnu: Add r-banocc. | expand

Checks

Context Check Description
cbaines/comparison success View comparision
cbaines/git branch success View Git branch
cbaines/applying patch success View Laminar job
cbaines/issue success View issue

Commit Message

Mădălin Ionel Patrașcu June 27, 2022, 10:42 p.m. UTC 
* gnu/packages/bioconductor.scm (r-banocc): New variable.
---
 gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)


base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff

Comments

Ricardo Wurmus Oct. 27, 2022, 2:02 p.m. UTC | #1 
Applied with minor changes.  Thank you!
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..61ce070559 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,34 @@  (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-banocc
+  (package
+    (name "r-banocc")
+    (version "1.20.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "banocc" version))
+              (sha256
+               (base32
+                "10vaggq1w5jkxd8r2k1mhymzvb7x3h8afwn2pvmcpj022ka7xhbx"))))
+    (properties `((upstream-name . "banocc")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-coda
+           r-mvtnorm
+           r-rstan
+           r-stringr))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/banocc")
+    (synopsis "Bayesian analysis of compositional covariance")
+    (description
+     "@code{BAnOCC} is a package designed for compositional data, where each
+sample sums to one.  It infers the approximate covariance of the unconstrained
+data using a Bayesian model coded with @code{rstan}.  It provides as output the
+@code{stanfit} object as well as posterior median and credible interval estimates
+for each correlation element.")
+    (license license:expat)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")