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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 23 Jun 2022 11:56:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 56165 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 56165@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.16559853331233 (code B ref -1); Thu, 23 Jun 2022 11:56:01 +0000 Received: (at submit) by debbugs.gnu.org; 23 Jun 2022 11:55:33 +0000 Received: from localhost ([127.0.0.1]:37641 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o4LQq-0000Jp-N5 for submit@debbugs.gnu.org; Thu, 23 Jun 2022 07:55:32 -0400 Received: from lists.gnu.org ([209.51.188.17]:56754) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o4LQm-0000Je-6J for submit@debbugs.gnu.org; Thu, 23 Jun 2022 07:55:30 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:46194) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o4LQk-0000GF-MK for guix-patches@gnu.org; Thu, 23 Jun 2022 07:55:27 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:53943) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o4LQh-0004yI-Tl for guix-patches@gnu.org; Thu, 23 Jun 2022 07:55:26 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id D7758160371 for ; Thu, 23 Jun 2022 13:55:19 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655985319; x=1657799720; bh=xwvUa8TUUnt0QxSjD08iZFn8UbCsCrKzgYQlYzOU0a0=; b=FuZa4wfkqwEJ smxx8dS2zYI0rH7VQYo8QrLyUkK2QimmhxIUD780UsbncS+C97LkrlmKtar4fGfY dFJJf+jInXT+arbiCAQ7HZGr7+21yanqBmGvwwz2b7ijCbTwvlhvIoEbvY6BfQtL xB+SdO8lTMAjU5k/CkMEdiNHasyNTXg= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 3cyazctJ7TLt for ; Thu, 23 Jun 2022 13:55:19 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 23 Jun 2022 13:55:19 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 23 Jun 2022 13:55:18 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Thu, 23 Jun 2022 13:54:42 +0200 Message-ID: <20220623115442.26983-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26972.007 X-TM-AS-Result: No-10--6.866300-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6ZEKL9WloxNcXjfR3d0weRjKv4QSPP2GxycO hvTXTlouSkIUZyUQUJ7VijUdnqQBWgljF8fKL2gni8zVgXoAltvbGdFF9BGjiC24oEZ6SpSk6XE E7Yhw4FiRLWm32RgFZnNbl+oSD8Ahx93BrLxlaqizOkvZpNEp7Bb754FwtfxE= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.866300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26972.007 X-TM-SNTS-SMTP: 58D7DADF9A8A821A2F8464E8714F406CF4A8A7CB2B00853FEEB362B2274D8F0A2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-attract): New variable. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..dcc9503a1b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,37 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-attract + (package + (name "r-attract") + (version "1.48.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "attract" version)) + (sha256 + (base32 + "0f1fsv278kpnxvqg9qa5rw2k3zr8zws0ab73ldl60h6pv9cy8x82")))) + (properties `((upstream-name . "attract"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-biobase + r-cluster + r-gostats + r-keggrest + r-limma + r-org-hs-eg-db + r-reactome-db)) + (home-page "https://bioconductor.org/packages/attract") + (synopsis "Finding drivers of Kauffman's attractor landscape") + (description + "This package contains the functions to find the gene expression modules +that represent the drivers of Kauffman's attractor landscape. The modules are +the core attractor pathways that discriminate between different cell types of +groups of interest. Each pathway has a set of synexpression groups, which show +transcriptionally-coordinated changes in gene expression.") + (license license:lgpl2.0+))) + (define-public r-biocversion (package (name "r-biocversion")