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[bug#56158] gnu: Add r-assessorf.

Message ID 20220623094257.21985-1-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#56158] gnu: Add r-assessorf. | expand


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Commit Message

Mădălin Ionel Patrașcu June 23, 2022, 9:42 a.m. UTC
* gnu/packages/bioconductor.scm (r-assessorf): New variable.
 gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
diff mbox series


diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..3f7743b0cb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,35 @@  (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
+(define-public r-assessorf
+  (package
+    (name "r-assessorf")
+    (version "1.14.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AssessORF" version))
+              (sha256
+               (base32
+                "1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7"))))
+    (properties `((upstream-name . "AssessORF")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-decipher
+           r-genomicranges
+           r-iranges))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AssessORF")
+    (synopsis "Assess gene predictions using proteomics and evolutionary conservation")
+    (description
+     "In order to assess the quality of a set of predicted genes for a genome,
+evidence must first be mapped to that genome.  Next, each gene must be categorized
+based on how strong the evidence is for or against that gene.  The @code{AssessORF}
+package provides the functions and class structures necessary for accomplishing
+those tasks, using proteomics hits and evolutionarily conserved start codons as
+the forms of evidence.")
+    (license license:gpl3)))
 (define-public r-biocversion
     (name "r-biocversion")