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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-aseb): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..f961d201d2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,32 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-aseb + (package + (name "r-aseb") + (version "1.40.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASEB" version)) + (sha256 + (base32 + "1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p")))) + (properties `((upstream-name . "ASEB"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/ASEB") + (synopsis "Predict acetylated lysine sites") + (description + "@code{ASEB} is an R package to predict lysine sites that can be acetylated +by a specific @dfn{KAT}-family (K-acetyl-transferases). Lysine acetylation is +a well-studied posttranslational modification on kinds of proteins. About four +thousand lysine acetylation sites and over 20 lysine KATs have been identified. +However, which KAT is responsible for a given protein or lysine site acetylation +is mostly unknown. In this package, we use a @dfn{GSEA}-like (Gene Set Enrichment +Analysis) method to make predictions. GSEA method was developed and successfully +used to detect coordinated expression changes and find the putative functions +of the long non-coding RNAs.") + (license license:gpl3+))) + (define-public r-biocversion (package (name "r-biocversion")