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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 22 Jun 2022 13:47:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 56141 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 56141@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.16559055754548 (code B ref -1); Wed, 22 Jun 2022 13:47:02 +0000 Received: (at submit) by debbugs.gnu.org; 22 Jun 2022 13:46:15 +0000 Received: from localhost ([127.0.0.1]:34439 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o40gR-0001BI-34 for submit@debbugs.gnu.org; Wed, 22 Jun 2022 09:46:15 -0400 Received: from lists.gnu.org ([209.51.188.17]:47484) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o40gO-0001B9-US for submit@debbugs.gnu.org; Wed, 22 Jun 2022 09:46:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:48610) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o40gO-00037j-C6 for guix-patches@gnu.org; Wed, 22 Jun 2022 09:46:12 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:51659) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o40gL-000799-P8 for guix-patches@gnu.org; Wed, 22 Jun 2022 09:46:11 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 1D828160362 for ; Wed, 22 Jun 2022 15:45:50 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655905549; x=1657719950; bh=1/v5DZHmhpBeBFm8rhSX5d3gGwTwQRJxS66xPDNLvtQ=; b=lnHqCEc3K2ct NvReDstTomYSqpb9ZDNMgsVSBVZtkel1S9pr9Jfb0kzuSXTUgdQh0kAiwuDlpNwY FMg9Jb4IY1MVAkeVBVSWnljI4b9sZ+jU08xQ60VtaScsLDZ2aQdvrJxu2NZRfrJZ +h+ZLy6zZuO0QzUSmWopiq25fXUbh0Y= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id pqnGzeYkXHwT for ; Wed, 22 Jun 2022 15:45:49 +0200 (CEST) Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Wed, 22 Jun 2022 15:45:49 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Wed, 22 Jun 2022 15:45:48 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Wed, 22 Jun 2022 15:45:33 +0200 Message-ID: <20220622134533.15458-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26970.005 X-TM-AS-Result: No-10--3.531200-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCzLRD51bz5RZOuLH9BII+4qrKs axUiN/ykX0jceDJtHIX6VxxWFgkHXo8WMkQWv6iUGJ4JQFnQmG42j49Ftap9Eymsk/wUE4hrdPm 6Zo4+L6uHRskZfSnnYydTVVWwhxWOAOV329uWnA0JZwpEaPI/JtgLV27rR2yEFbtiGtaho67NvB ssOMTECNUmgJg++gCbjbMXojSkk1rTnVnv1JP77sGTvZJmllrz/PhPL0kApH8kjm+elEcbI X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.531200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26970.005 X-TM-SNTS-SMTP: C378852F4AC19A6D58F6B03F7C8350E328A2AF4C015A9FC00AEEF096F1D019202002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-asafe): New variable. --- gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..2d199a79f2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,28 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-asafe + (package + (name "r-asafe") + (version "1.22.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASAFE" version)) + (sha256 + (base32 + "1l9iqw2imr6w2gwqrmg05jp6lj2xc7hbyhd144d4q8vw8z7ga4ns")))) + (properties `((upstream-name . "ASAFE"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ASAFE") + (synopsis "Ancestry Specific Allele Frequency Estimation") + (description + "The @code{ASAFE} package contains a collection of functions that can be used +to carry out an @dfn{EM} (Expectation–maximization) algorithm to estimate ancestry +-specific allele frequencies for a bi-allelic genetic marker, e.g. an @dfn{SNP} +(single nucleotide polymorphism) from genotypes and ancestry pairs.") + (license license:artistic2.0))) + (define-public r-biocversion (package (name "r-biocversion")