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(license license:artistic2.0))) +(define-public r-microbiome + (package + (name "r-microbiome") + (version "1.18.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "microbiome" version)) + (sha256 + (base32 + "1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12")))) + (properties `((upstream-name . "microbiome"))) + (build-system r-build-system) + (propagated-inputs + (list r-biostrings + r-compositions + r-dplyr + r-ggplot2 + r-phyloseq + r-reshape2 + r-rtsne + r-scales + r-tibble + r-tidyr + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://microbiome.github.io/microbiome/") + (synopsis "Tools for microbiome analysis") + (description + "The @code{microbiome} facilitates @code{phyloseq} exploration and analysis +of taxonomic profiling data. This package provides tools for the manipulation, +statistical analysis, and visualization of taxonomic profiling data. In addition +to targeted case-control studies, the @code{microbiome} facilitates scalable +exploration of population cohorts. This package supports the independent +@code{phyloseq} data format and expands the available toolkit in order to +facilitate the standardization of the analyses and the development of best +practices.") + (license license:bsd-2))) + (define-public r-minfi (package (name "r-minfi")