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[bug#56023] gnu: Add r-alphabeta.

Message ID 20220616163502.27554-1-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#56023] gnu: Add r-alphabeta. | expand

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Commit Message

Mădălin Ionel Patrașcu June 16, 2022, 4:35 p.m. UTC 
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
---
 gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)


base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb

Comments

Ricardo Wurmus Nov. 24, 2022, 2:20 p.m. UTC | #1 
Applied, thanks!
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..cd9923a946 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,46 @@  (define-public r-agimicrorna
 objects are used so that other packages could be used as well.")
     (license license:gpl3)))
 
+(define-public r-alphabeta
+  (package
+    (name "r-alphabeta")
+    (version "1.10.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AlphaBeta" version))
+              (sha256
+               (base32
+                "1ikdrigma02gnl6ggrc89bjsiqmd7knpb9kw7nqyrdnv3qjd9iag"))))
+    (properties `((upstream-name . "AlphaBeta")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biocparallel
+           r-data-table
+           r-dplyr
+           r-expm
+           r-ggplot2
+           r-gtools
+           r-igraph
+           r-optimx
+           r-plotly
+           r-stringr))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AlphaBeta")
+    (synopsis
+     "Estimating epimutation rates and spectra from DNA methylations in plants")
+    (description
+     "The package @code{AlphaBeta} is a computational method for estimating
+epimutation rates and spectra from high-throughput DNA methylation data in plants.
+The method has been specifically designed to:
+@itemize
+@item
+analyze @emph{germline} epimutations in the context of multi-generational mutation
+accumulation lines;
+@item
+analyze @emph{somatic} epimutations in the context of plant development and aging.
+@end itemize")
+    (license license:gpl3)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")