@@ -5049,6 +5049,47 @@ (define-public r-scdblfinder
comprehensive scDblFinder method.")
(license license:gpl3)))
+(define-public r-scmap
+ (package
+ (name "r-scmap")
+ (version "1.18.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scmap" version))
+ (sha256
+ (base32 "0pfwaa9pgml11b84rpf7afdkmg8kxb4srgpc56571vaz388xrv7l"))))
+ (properties `((upstream-name . "scmap")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-biocgenerics
+ r-dplyr
+ r-e1071
+ r-ggplot2
+ r-googlevis
+ r-matrixstats
+ r-proxy
+ r-randomforest
+ r-rcpp
+ r-rcpparmadillo
+ r-reshape2
+ r-s4vectors
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/hemberg-lab/scmap")
+ (synopsis "Tool for unsupervised projection of single cell RNA-seq data")
+ (description
+ "@dfn{Single-cell RNA-seq} (scRNA-seq) is widely used to investigate the
+composition of complex tissues since the technology allows researchers to define
+cell-types using unsupervised clustering of the transcriptome. However, due to
+differences in experimental methods and computational analyses, it is often
+challenging to directly compare the cells identified in two different experiments.
+@code{scmap} is a method for projecting cells from a scRNA-seq experiment onto
+the cell-types or individual cells identified in a different experiment.")
+ (license license:gpl3)))
+
(define-public r-seqlogo
(package
(name "r-seqlogo")