From patchwork Sun May 15 04:37:15 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Maxim Cournoyer X-Patchwork-Id: 39337 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id F31FF27BBEA; Sun, 15 May 2022 06:02:45 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 815BD27BBE9 for ; Sun, 15 May 2022 06:02:45 +0100 (BST) Received: from localhost ([::1]:34174 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1nq6Oy-0005NQ-Mc for patchwork@mira.cbaines.net; Sun, 15 May 2022 01:02:44 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43478) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nq6If-0000YU-NL for guix-patches@gnu.org; Sun, 15 May 2022 00:56:13 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:54389) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1nq6Ie-0006cI-1d for guix-patches@gnu.org; Sun, 15 May 2022 00:56:13 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1nq6Ie-0003bq-1H for guix-patches@gnu.org; Sun, 15 May 2022 00:56:12 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55424] [PATCH 048/602] gnu: Remove nmoldyn. Resent-From: Maxim Cournoyer Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 15 May 2022 04:56:11 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 55424 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55424@debbugs.gnu.org Cc: Maxim Cournoyer Received: via spool by 55424-submit@debbugs.gnu.org id=B55424.165259053213450 (code B ref 55424); Sun, 15 May 2022 04:56:11 +0000 Received: (at 55424) by debbugs.gnu.org; 15 May 2022 04:55:32 +0000 Received: from localhost ([127.0.0.1]:48204 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nq6Hz-0003Um-Hw for submit@debbugs.gnu.org; Sun, 15 May 2022 00:55:31 -0400 Received: from mail-qt1-f171.google.com ([209.85.160.171]:44549) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nq6AB-0002wX-Uo for 55424@debbugs.gnu.org; Sun, 15 May 2022 00:47:33 -0400 Received: by mail-qt1-f171.google.com with SMTP id i20so10048110qti.11 for <55424@debbugs.gnu.org>; Sat, 14 May 2022 21:47:27 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=UGkLn4q9YRzuu7Vem1WpZhsFSSJkaMgh1KAfNIyI3F4=; b=a9decSiXVa/gWeYbWdHPFI9KFK6EtFFJBnC+C5aAkljVFOtXVSDQ52oOJvrFQ+XJpl /VKRV056FqhZWLJrueGeamKyi4MTAp3bfMoAZvrimtiUpAwtAMovborJ5GsC+/jw/WrD ekXXOItk+ob3QvKOGCTecu2pyd/e9qwIv4l5QBgMVwewbv/i/GlKDB8zqjZRM5K6n5Ym 7CmWx45yo8aU14BX4p22RUqvNON+pqEXEKO/XbPDHlZytYGBR9KSJCihlzzvSGKmjrD9 fMaVdqnye5WGcU+5nq4Gn0tZ2VYW3d3cVrsG2JjI4oDlYEJOHgKzJjhkGZcnmmi4V5Au KQeQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=UGkLn4q9YRzuu7Vem1WpZhsFSSJkaMgh1KAfNIyI3F4=; b=4b2HVc9+T1bAxNSFs4oCq9f9xHwu7ecaiR7pj3k4Sqv7AOJn/8ZVEMgOgCzEXPJ9Fn ZWYEhn20hmyfbvycGqum51xmVyq8TKkeRFPeNijR284wL3NIrX+zy/adF/ngJ0m17mSy fzLCAhPmm+1PRNC512GM0Q9YDf3DTVSbwd/RBfBa8lhZzKLkKV3RooOpSYdGot/zq6x7 eYcU+xL3qQrqgxxNF2SJfhavrR1c0GVvkfrYxqCT0piVNBe5rgy9hufnKOvgPgqBH0oR zitf0ajm0dsLlYsx+gFTPABXGJw8/desnhRhmk9YmH+UimOa6UzSRGBZWolwCmQPbA4R dafA== X-Gm-Message-State: AOAM531zv94MVA2+BUz6nbvXw5FYK7MF0r5wIttTQSRHS0QswdmMZUsb gXdZFWDqiW8r2B/eCVXGQ8yW0m+rQ7sLOQ== X-Google-Smtp-Source: ABdhPJyDnvmur9H6dlVWl8J5VkLcqick1/F6UP4uZ3JQSjfqXZ5ID/quwOye5Dd660PYQLhkYrwSFQ== X-Received: by 2002:a05:622a:1186:b0:2f3:cfb7:43da with SMTP id m6-20020a05622a118600b002f3cfb743damr10705466qtk.538.1652590047459; Sat, 14 May 2022 21:47:27 -0700 (PDT) Received: from localhost.localdomain (dsl-149-239.b2b2c.ca. [66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.26 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:27 -0700 (PDT) From: Maxim Cournoyer Date: Sun, 15 May 2022 00:37:15 -0400 Message-Id: <20220515044629.6843-48-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/chemistry.scm (nmoldyn): Delete variable. --- gnu/packages/chemistry.scm | 60 -------------------------------------- 1 file changed, 60 deletions(-) diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm index d94f3ec787..e5b6309585 100644 --- a/gnu/packages/chemistry.scm +++ b/gnu/packages/chemistry.scm @@ -306,66 +306,6 @@ (define-public molequeue (define with-numpy-1.8 (package-input-rewriting `((,python2-numpy . ,python2-numpy-1.8)))) -(define-public nmoldyn - (package - (name "nmoldyn") - (version "3.0.11") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/khinsen/nMOLDYN3") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "016h4bqg419p6s7bcx55q5iik91gqmk26hbnfgj2j6zl0j36w51r")))) - (build-system python-build-system) - (inputs - (list (with-numpy-1.8 python2-matplotlib) python2-scientific netcdf - gv)) - (propagated-inputs - (list python2-mmtk)) - (arguments - `(#:python ,python-2 - #:tests? #f ; No test suite - #:phases - (modify-phases %standard-phases - (add-before 'build 'create-linux2-directory - (lambda _ - (mkdir-p "nMOLDYN/linux2"))) - (add-before 'build 'change-PDF-viewer - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "nMOLDYN/Preferences.py" - ;; Set the paths for external executables, substituting - ;; gv for acroread. - ;; There is also vmd_path, but VMD is not free software - ;; and Guix contains currently no free molecular viewer that - ;; could be substituted. - (("PREFERENCES\\['acroread_path'\\] = ''") - (format #f "PREFERENCES['acroread_path'] = '~a'" - (which "gv"))) - (("PREFERENCES\\['ncdump_path'\\] = ''") - (format #f "PREFERENCES['ncdump_path'] = '~a'" - (which "ncdump"))) - (("PREFERENCES\\['ncgen_path'\\] = ''") - (format #f "PREFERENCES['ncgen_path'] = '~a'" - (which "ncgen3"))) - (("PREFERENCES\\['task_manager_path'\\] = ''") - (format #f "PREFERENCES['task_manager_path'] = '~a'" - (which "task_manager"))) - ;; Show documentation as PDF - (("PREFERENCES\\['documentation_style'\\] = 'html'") - "PREFERENCES['documentation_style'] = 'pdf'") )))))) - (home-page "http://dirac.cnrs-orleans.fr/nMOLDYN.html") - (synopsis "Analysis software for Molecular Dynamics trajectories") - (description "nMOLDYN is an interactive analysis program for Molecular Dynamics -simulations. It is especially designed for the computation and decomposition of -neutron scattering spectra, but also computes other quantities. The software -is currently not actively maintained and works only with Python 2 and -NumPy < 1.9.") - (license license:cecill))) - (define-public tng (package (name "tng")