| Message ID | 20220515044629.6843-30-maxim.cournoyer@gmail.com |
|---|---|
| State | Accepted |
| Headers | show
Return-Path: <guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org> X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4B21727BBEB; Sun, 15 May 2022 06:06:54 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_INVALID,DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI, SPF_HELO_PASS autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 014C427BBEA for <patchwork@mira.cbaines.net>; Sun, 15 May 2022 06:06:54 +0100 (BST) Received: from localhost ([::1]:38968 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from <guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org>) id 1nq6Sz-0000gi-43 for patchwork@mira.cbaines.net; Sun, 15 May 2022 01:06:53 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43526) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1nq6Im-0000dE-99 for guix-patches@gnu.org; Sun, 15 May 2022 00:56:21 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:54409) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1nq6Il-0006f2-SX for guix-patches@gnu.org; Sun, 15 May 2022 00:56:20 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1nq6Il-0003eE-Rm for guix-patches@gnu.org; Sun, 15 May 2022 00:56:19 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55424] [PATCH 030/602] gnu: Remove python2-pbcore. Resent-From: Maxim Cournoyer <maxim.cournoyer@gmail.com> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces@debbugs.gnu.org> Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 15 May 2022 04:56:19 +0000 Resent-Message-ID: <handler.55424.B55424.165259054413619@debbugs.gnu.org> Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 55424 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55424@debbugs.gnu.org Cc: Maxim Cournoyer <maxim.cournoyer@gmail.com> Received: via spool by 55424-submit@debbugs.gnu.org id=B55424.165259054413619 (code B ref 55424); Sun, 15 May 2022 04:56:19 +0000 Received: (at 55424) by debbugs.gnu.org; 15 May 2022 04:55:44 +0000 Received: from localhost ([127.0.0.1]:48246 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces@debbugs.gnu.org>) id 1nq6IC-0003XV-Gi for submit@debbugs.gnu.org; Sun, 15 May 2022 00:55:44 -0400 Received: from mail-io1-f50.google.com ([209.85.166.50]:36671) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maxim.cournoyer@gmail.com>) id 1nq6Hr-0003Ry-M7 for 55424@debbugs.gnu.org; Sun, 15 May 2022 00:55:24 -0400 Received: by mail-io1-f50.google.com with SMTP id e15so12872416iob.3 for <55424@debbugs.gnu.org>; Sat, 14 May 2022 21:55:23 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=2FO4SlFDUJAdZ2iUJcF6XJprbUwOUti72BPrX1N+dgg=; b=mvSBSFi94H3Mbxody7+wuXCALbRzEw5DGOVoQUU9A+aC0nXpEAgRx1UsRrtHbSaCw9 Pw/Wqt/E3uRLX1D9XmwBXKzMWL2IxkdpqSHru3FCQ6b+4wwuFFpZ3cUmu49IhYrgCj6S 2uMnF/EKBlgipMpr73p1U4efdYu0ezCh6+D4T+nQ4Coy3V4u8ls/On8sYYNPaeSFhRO5 O5U56ApHzGAkjrPwtpfjJ7B1S9JK3ft8lj8IwSlWPDq4h0Ewsj9WKnTKvZZ8VGUc1uSb tqORLFbzeE5xSPhzmpfuul1dF4IABhhuVQpRk+L/8RqM8BaoK6kRaPdR2yFEwwaNzQEH 4DxA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=2FO4SlFDUJAdZ2iUJcF6XJprbUwOUti72BPrX1N+dgg=; b=Ekyie2MPVerAeaW61eFHG5lSuzsNyzW8joVO3UW5PqZrRFcsop2v5zgfTIvDRlU/9s OcBV1I+aCkj5okGyuSpa74RicRVc+6Q0wFZJPocO8H2qCKmGXxZealFzZUUxh9xPuGyX NlU+6V2BHWJDUtO7i8EwEiBPk8s3DqdSvfh2UqPtwdimmQorJMNLGCaOAwCBbI585AEe DrFxawPaL+RcBTQPhlL4DRXLO3C2jktpI/CU44fEcnpEKP88CsjnvY0LDiD5EfHHR6bH JtxiBTHaG1UCAsT8WIyTfZhVwQRW2nc4VN94QjlT7Rsg5KmKxXGVDK+AgxXoxnkCtEFj IHlw== X-Gm-Message-State: AOAM530RpnhljS3UGSQ7OXXqlxGDuCt54KkQjJ523++2WzdTF0m98wjc QyXb+JxdbXyz9zO3cQvDyrrZNAXmuENBug== X-Google-Smtp-Source: ABdhPJxwBr+iN/Rr2M82tjM+vIvn4DahRkwga0fdkNuLs+nz9+DZsdTvbt2JuC9/gGdnypoRs37DgA== X-Received: by 2002:a05:620a:2950:b0:6a0:579e:502f with SMTP id n16-20020a05620a295000b006a0579e502fmr8720504qkp.124.1652590034677; Sat, 14 May 2022 21:47:14 -0700 (PDT) Received: from localhost.localdomain (dsl-149-239.b2b2c.ca. [66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.14 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:14 -0700 (PDT) From: Maxim Cournoyer <maxim.cournoyer@gmail.com> Date: Sun, 15 May 2022 00:36:57 -0400 Message-Id: <20220515044629.6843-30-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: <guix-patches.gnu.org> List-Unsubscribe: <https://lists.gnu.org/mailman/options/guix-patches>, <mailto:guix-patches-request@gnu.org?subject=unsubscribe> List-Archive: <https://lists.gnu.org/archive/html/guix-patches> List-Post: <mailto:guix-patches@gnu.org> List-Help: <mailto:guix-patches-request@gnu.org?subject=help> List-Subscribe: <https://lists.gnu.org/mailman/listinfo/guix-patches>, <mailto:guix-patches-request@gnu.org?subject=subscribe> Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" <guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org> X-getmail-retrieved-from-mailbox: Patches |
| Series |
Purge Python 2 packages
|
expand
|
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index dd811815e0..bda958f6f5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5284,39 +5284,6 @@ (define-public orfm (home-page "https://github.com/wwood/OrfM") (license license:lgpl3+))) -(define-public python2-pbcore - (package - (name "python2-pbcore") - (version "1.2.10") - (source (origin - (method url-fetch) - (uri (pypi-uri "pbcore" version)) - (sha256 - (base32 - "1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 ;pbcore < 2.0 requires Python 2.7 - #:phases (modify-phases %standard-phases - (add-after 'unpack 'remove-sphinx-dependency - (lambda _ - ;; Sphinx is only required for documentation tests, which - ;; we do not run; furthermore it depends on python2-sphinx - ;; which is no longer maintained. - (substitute* "requirements-dev.txt" - (("^sphinx") "")) - #t))))) - (propagated-inputs - (list python2-cython python2-numpy python2-pysam python2-h5py)) - (native-inputs - (list python2-nose python2-pyxb)) - (home-page "https://pacificbiosciences.github.io/pbcore/") - (synopsis "Library for reading and writing PacBio data files") - (description - "The pbcore package provides Python APIs for interacting with PacBio data -files and writing bioinformatics applications.") - (license license:bsd-3))) - (define-public prank (package (name "prank")