| Message ID | 20220515044629.6843-26-maxim.cournoyer@gmail.com |
|---|---|
| State | Accepted |
| Headers | show
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[66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.11 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:11 -0700 (PDT) From: Maxim Cournoyer <maxim.cournoyer@gmail.com> Date: Sun, 15 May 2022 00:36:53 -0400 Message-Id: <20220515044629.6843-26-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: <guix-patches.gnu.org> List-Unsubscribe: <https://lists.gnu.org/mailman/options/guix-patches>, <mailto:guix-patches-request@gnu.org?subject=unsubscribe> List-Archive: <https://lists.gnu.org/archive/html/guix-patches> List-Post: <mailto:guix-patches@gnu.org> List-Help: <mailto:guix-patches-request@gnu.org?subject=help> List-Subscribe: <https://lists.gnu.org/mailman/listinfo/guix-patches>, <mailto:guix-patches-request@gnu.org?subject=subscribe> Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" <guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org> X-getmail-retrieved-from-mailbox: Patches |
| Series |
Purge Python 2 packages
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expand
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diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c70b9e3aa7..b0ad03612e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5365,47 +5365,6 @@ (define-public python2-pbcore files and writing bioinformatics applications.") (license license:bsd-3))) -(define-public python2-warpedlmm - (package - (name "python2-warpedlmm") - (version "0.21") - (source - (origin - (method url-fetch) - (uri (pypi-uri "WarpedLMM" version ".zip")) - (sha256 - (base32 - "1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 ; requires Python 2.7 - #:tests? #f ; test data are not included - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'use-weave - (lambda _ - (substitute* "warpedlmm/util/linalg.py" - (("from scipy import linalg, weave") - "from scipy import linalg\nimport weave")) - #t))))) - (propagated-inputs - (list python2-scipy - python2-numpy - python2-matplotlib - python2-fastlmm - python2-pandas - python2-pysnptools - python2-weave)) - (native-inputs - (list python2-mock python2-nose unzip)) - (home-page "https://github.com/PMBio/warpedLMM") - (synopsis "Implementation of warped linear mixed models") - (description - "WarpedLMM is a Python implementation of the warped linear mixed model, -which automatically learns an optimal warping function (or transformation) for -the phenotype as it models the data.") - (license license:asl2.0))) - (define-public prank (package (name "prank")