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[66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.10 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:10 -0700 (PDT) From: Maxim Cournoyer Date: Sun, 15 May 2022 00:36:52 -0400 Message-Id: <20220515044629.6843-25-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (poretools): Delete variable. --- gnu/packages/bioinformatics.scm | 36 --------------------------------- 1 file changed, 36 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cb3328cc1c..c70b9e3aa7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12855,42 +12855,6 @@ (define-public porechop Barcoding Kit or Rapid Barcoding Kit.") (license license:gpl3+)))) -(define-public poretools - ;; The latest release was in 2016 and the latest commit is from 2017 - ;; the recommended way to install is to clone the git repository - ;; https://poretools.readthedocs.io/en/latest/content/installation.html - (let ((commit "e426b1f09e86ac259a00c261c79df91510777407") - (revision "1")) - (package - (name "poretools") - (version (git-version "0.6.0" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/arq5x/poretools") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0bglj833wxpp3cq430p1d3xp085ls221js2y90w7ir2x5ay8l7am")))) - (build-system python-build-system) - ;; requires python >=2.7, <3.0, and the same for python dependencies - (arguments `(#:python ,python-2)) - (inputs - (list hdf5)) - (propagated-inputs - (list python2-dateutil python2-h5py python2-matplotlib - python2-pandas python2-seaborn)) - (home-page "https://poretools.readthedocs.io") - (synopsis "Toolkit for working with nanopore sequencing data") - (description - "The MinION from Oxford Nanopore Technologies is a nanopore sequencer. -This @code{poretools} package is a flexible toolkit for exploring datasets -generated by nanopore sequencing devices for the purposes of quality control and -downstream analysis. Poretools operates directly on the native FAST5, a variant -of the Hierarchical Data Format (HDF5) standard.") - (license license:expat)))) - (define-public jamm (package (name "jamm")