From patchwork Tue May 3 06:53:10 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 39091 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7EA8527BBEA; Tue, 3 May 2022 07:55:16 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1001F27BBE9 for ; Tue, 3 May 2022 07:55:16 +0100 (BST) Received: from localhost ([::1]:36632 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1nlmRH-00008U-5t for patchwork@mira.cbaines.net; Tue, 03 May 2022 02:55:15 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47896) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmQD-00004r-OL for guix-patches@gnu.org; Tue, 03 May 2022 02:54:13 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:44649) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1nlmQ7-0006hG-M1 for guix-patches@gnu.org; Tue, 03 May 2022 02:54:08 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1nlmQ7-000621-LM for guix-patches@gnu.org; Tue, 03 May 2022 02:54:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55241] [PATCH 3/4] gnu: Add r-smurf. Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 03 May 2022 06:54:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 55241 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55241@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.165156081423100 (code B ref -1); Tue, 03 May 2022 06:54:03 +0000 Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:53:34 +0000 Received: from localhost ([127.0.0.1]:38540 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPe-00060P-Hi for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:34 -0400 Received: from lists.gnu.org ([209.51.188.17]:45510) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPc-000609-AZ for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:32 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47872) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPa-0008NQ-Np for guix-patches@gnu.org; Tue, 03 May 2022 02:53:32 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:59811) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPY-0006ez-HN for guix-patches@gnu.org; Tue, 03 May 2022 02:53:30 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 4DE96300169 for ; Tue, 3 May 2022 08:53:26 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1651560805; x=1653375206; bh=VZTTdtHBfv0Ql7B1Qo7yQwnQz44Z+Xf3Iwi TtD/nHpw=; b=m0JVnQsZdYURwnKbRYMeJzWQEg7xzh2H504tJS+sk9SPJbhxTW6 CXmaoqSEQZKm8otWUjPlU+xweR9e71vOx1tUdOwbNYaHVvYXmr3IxzbNT/ox4EH6 PCnX4lyldOKfhTRnjI1rJyGbBc0LQZDKbvSGm+aPSW6A0wdM53bWDQe0= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 59M3TlH3pnfu for ; Tue, 3 May 2022 08:53:25 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 08:53:25 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 08:53:24 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 3 May 2022 08:53:10 +0200 Message-ID: <20220503065311.9192-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> References: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-AS-Result: No-10--1.022900-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6v8fLAX0P50AxLxDYO3UlDEYx760ONDcWm3P fEX0yKHHxSJI9FrYN42HdNGuvvf8oo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0VSLl cWeO1N48PZmEi469a07dtNXnLsoV8LraCVwvI0FVCozHgFSMQb4pYQ5SJBQvPGCY87cq/qbhq3l oeMiDRPbecpFU+TWJ1ZKCalsVmcQjWQPYq1JOarY9u3lK2/Yrn87HRNT0KLkg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.022900-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-SNTS-SMTP: 753294651DC09A4F4351B7A2EA22EFC3C3F1B72D9C4F4F9884469C878CC7E9202002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-smurf): New variable. --- gnu/packages/cran.scm | 42 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 63e2b71cd3..099bfb8002 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5907,6 +5907,48 @@ (define-public r-sm and density estimation") (license license:gpl2+))) +(define-public r-smurf + (package + (name "r-smurf") + (version "1.1.2") + (source (origin + (method url-fetch) + (uri (cran-uri "smurf" version)) + (sha256 + (base32 + "00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf")))) + (properties `((upstream-name . "smurf"))) + (build-system r-build-system) + (propagated-inputs + (list r-catdata + r-glmnet + r-mass + r-matrix + r-mgcv + r-rcolorbrewer + r-rcpp + r-rcpparmadillo + r-speedglm)) + (native-inputs (list r-knitr)) + (home-page "https://gitlab.com/TReynkens/smurf") + (synopsis "Sparse multi-type regularized feature modeling") + (description + "The @code{smurf} package contains the implementation of the @dfn{Sparse +Multi-type Regularized Feature} (SMuRF) modeling algorithm to fit +@dfn{generalized linear models} (GLMs) with multiple types of predictors via +regularized maximum likelihood. Next to the fitting procedure, following +functionality is available: + +@itemize @bullet +@item +Selection of the regularization tuning parameter lambda using three different +approaches: in-sample, out-of-sample or using cross-validation. +@item +S3 methods to handle the fitted object including visualization of the coefficients +and a model summary. +@end itemize") + (license license:gpl2+))) + (define-public r-venndiagram (package (name "r-venndiagram")