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[bug#55219] gnu: Add r-aims.

Message ID 20220502094955.32309-1-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#55219] gnu: Add r-aims. | expand


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Commit Message

Mădălin Ionel Patrașcu May 2, 2022, 9:49 a.m. UTC
* gnu/packages/bioconductor.scm (r-aims): New variable.
 gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

base-commit: 098f2eea331121905e3c867f478b22cea3510841
diff mbox series


diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a78903becc..17fa746fae 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1877,6 +1877,29 @@  (define-public r-agilp
     ;; GPLv3.
     (license license:gpl3)))
+(define-public r-aims
+  (package
+    (name "r-aims")
+    (version "1.28.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AIMS" version))
+              (sha256
+               (base32
+                "1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx"))))
+    (properties `((upstream-name . "AIMS")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biobase r-e1071))
+    (home-page "https://git.bioconductor.org/packages/AIMS")
+    (synopsis
+     "Absolute assignment of breast cancer intrinsic molecular subtype")
+    (description
+     "This package contains the @code{AIMS} implementation.  It contains
+necessary functions to assign the five intrinsic molecular subtypes (Luminal A,
+Luminal B, Her2-enriched, Basal-like, Normal-like).  Assignments could be done
+on individual samples as well as on dataset of gene expression data.")
+    (license license:artistic2.0)))
 (define-public r-aneufinder
     (name "r-aneufinder")