From patchwork Tue Apr 26 12:46:39 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 38906 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 0DA1D27BBEA; Tue, 26 Apr 2022 13:49:05 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D602C27BBE9 for ; Tue, 26 Apr 2022 13:49:04 +0100 (BST) Received: from localhost ([::1]:51084 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1njKcp-0000wN-Vz for patchwork@mira.cbaines.net; Tue, 26 Apr 2022 08:49:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43904) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1njKay-0007EM-W9 for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:10 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43668) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1njKay-0007Vv-Ej for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:08 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1njKay-0004nx-C3 for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:08 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55125] [PATCH 9/9] gnu: vcflib: Set absolute path to pkg-config. Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 26 Apr 2022 12:47:08 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 55125 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55125@debbugs.gnu.org Cc: Arun Isaac Received: via spool by 55125-submit@debbugs.gnu.org id=B55125.165097721717929 (code B ref 55125); Tue, 26 Apr 2022 12:47:08 +0000 Received: (at 55125) by debbugs.gnu.org; 26 Apr 2022 12:46:57 +0000 Received: from localhost ([127.0.0.1]:37555 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njKam-0004eo-Lx for submit@debbugs.gnu.org; Tue, 26 Apr 2022 08:46:56 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:36290) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njKah-0004ZY-Si for 55125@debbugs.gnu.org; Tue, 26 Apr 2022 08:46:52 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-Id:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=EfmrN9/an8n+Kt2wZSBWNXSrx89D+PoklMuC3uk+iic=; b=TRgDnDAagcqiFZd03zT2skCGxg v89TkeU3VsekE3+qRhSkNduStG1JE6u2llfISZVkhjyVzZ8vNO81cxZ6/BdjIAypjY7ya/QrO5bN1 9LkaPSBl/SV1IV6wJghDOD5w91bfUVUq4JPJxbqs5mBzomhteLAMJ3SyUBOhHq0DJB/TIUeD2HRgh jzVm5m8xj3VguAznN7Cqlq/XiRxBumYB+dmpMn1KvuNDCHV4UQWwmOd0YLZuOBVaYJT0A+iNR2YQY Dt2HoSTx3JORaqz6kako/OES4Jo0h1luWKnrJSiaqictfWksJxgy1wnmWoRRt/KswDAMVMWgjggeI GQpQnIKw==; Received: from [192.168.2.1] (port=53438 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.95) (envelope-from ) id 1njKaa-000HJN-Vq; Tue, 26 Apr 2022 18:16:45 +0530 From: Arun Isaac Date: Tue, 26 Apr 2022 18:16:39 +0530 Message-Id: <20220426124639.17159-9-arunisaac@systemreboot.net> X-Mailer: git-send-email 2.35.1 In-Reply-To: <20220426124639.17159-1-arunisaac@systemreboot.net> References: <20220426124639.17159-1-arunisaac@systemreboot.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Setting the absolute path to pkg-config is required to support cross-compilation. * gnu/packages/bioinformatics.scm (vcflib)[arguments]: Set PKG_CONFIG_EXECUTABLE in #:configure-flags. --- gnu/packages/bioinformatics.scm | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b4d809b4db..7f374873ac 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14589,7 +14589,13 @@ (define-public vcflib ("intervaltree-src" ,(package-source intervaltree)) ("multichoose-src" ,(package-source multichoose)))) (arguments - (list #:tests? #f ; no tests + (list #:configure-flags + #~(list (string-append + "-DPKG_CONFIG_EXECUTABLE=" + (search-input-file + %build-inputs (string-append + "/bin/" #$(pkg-config-for-target))))) + #:tests? #f ; no tests #:phases #~(modify-phases %standard-phases (add-after 'unpack 'build-shared-library