From patchwork Tue Apr 26 12:46:36 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 38912 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C086427BBEA; Tue, 26 Apr 2022 13:57:10 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8E6CB27BBE9 for ; Tue, 26 Apr 2022 13:57:10 +0100 (BST) Received: from localhost ([::1]:47182 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1njKkf-0000bd-OC for patchwork@mira.cbaines.net; Tue, 26 Apr 2022 08:57:09 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43898) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1njKax-0007CE-5f for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:07 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43664) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1njKav-0007VU-KE for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:06 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1njKav-0004m3-Hr for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:05 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55125] [PATCH 6/9] gnu: fastahack: Use compiler specific to the build target. Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 26 Apr 2022 12:47:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 55125 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55125@debbugs.gnu.org Cc: Arun Isaac Received: via spool by 55125-submit@debbugs.gnu.org id=B55125.165097721517835 (code B ref 55125); Tue, 26 Apr 2022 12:47:05 +0000 Received: (at 55125) by debbugs.gnu.org; 26 Apr 2022 12:46:55 +0000 Received: from localhost ([127.0.0.1]:37547 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njKal-0004dK-9R for submit@debbugs.gnu.org; Tue, 26 Apr 2022 08:46:55 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:36284) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njKac-0004VD-5u for 55125@debbugs.gnu.org; Tue, 26 Apr 2022 08:46:48 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-Id:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=+bfeDCBoFBJ/hZ48qfjsfkJhW5W9+F7doDHmMxdqIBI=; b=layh5BFiCQHnVLP5NqhlLalNOc hpVG2Me01WFrxZeeUL2Sp5iB30JhF2xtH7JD6ATn2re/SnAkCZCoqx7W4LkfLFdnpJ1DYpHPHm1FU Y/Ecp7RBPjo0b4xEY4FWnnsdCoK9ZN3JcW5pjrvZc3QpKyJzcHNzyhn5lZAnc24AdFYdwDs6df7tJ 8u34EewFoSnadtWrz0Nw/7T5lADTpVQhPK8nIPwaOLgHf0Gq0wZTXXUXqM+CmPh3ArjLLddvcCRW1 zbyGK8cxHUYrfgep0/34mpdGmc/o4ty9hyYT5c4OI2fX353u1YYqxEGVISdyyrt33sjx/jA2Uf8yg h2JKTIkg==; Received: from [192.168.2.1] (port=53438 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.95) (envelope-from ) id 1njKaa-000HJN-96; Tue, 26 Apr 2022 18:16:44 +0530 From: Arun Isaac Date: Tue, 26 Apr 2022 18:16:36 +0530 Message-Id: <20220426124639.17159-6-arunisaac@systemreboot.net> X-Mailer: git-send-email 2.35.1 In-Reply-To: <20220426124639.17159-1-arunisaac@systemreboot.net> References: <20220426124639.17159-1-arunisaac@systemreboot.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (fastahack)[arguments]: Set CXX in #:make-flags. In the build-dynamic phase, use cxx-for-target instead of g++. --- gnu/packages/bioinformatics.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 699a4eaf47..ad69ca59cf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14483,7 +14483,8 @@ (define-public fastahack (base32 "0rp1blskhzxf7vbh253ibpxbgl9wwgyzf1wbkxndi08d3j4vcss9")))) (build-system gnu-build-system) (arguments - (list #:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15 + (list #:make-flags #~(list (string-append "CXX=" #$(cxx-for-target))) + #:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15 #:phases #~(modify-phases %standard-phases (delete 'configure) ; There is no configure phase. @@ -14493,7 +14494,7 @@ (define-public fastahack (("-c ") "-c -fPIC ")))) (add-after 'build 'build-dynamic (lambda _ - (invoke "g++" + (invoke #$(cxx-for-target) "-shared" "-o" "libfastahack.so" "Fasta.o" "FastaHack.o" "split.o" "disorder.o"))) (replace 'install