From patchwork Tue Apr 26 12:46:34 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 38908 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D9EE827BBEA; Tue, 26 Apr 2022 13:56:14 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id AF09C27BBE9 for ; Tue, 26 Apr 2022 13:56:14 +0100 (BST) Received: from localhost ([::1]:43308 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1njKjl-0006So-Sf for patchwork@mira.cbaines.net; Tue, 26 Apr 2022 08:56:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:43888) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1njKat-0007Ab-BY for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43660) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1njKat-0007V5-29 for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1njKas-0004k3-Se for guix-patches@gnu.org; Tue, 26 Apr 2022 08:47:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55125] [PATCH 4/9] gnu: tabixpp: Add bzip2 and xz to inputs. Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 26 Apr 2022 12:47:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 55125 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55125@debbugs.gnu.org Cc: Arun Isaac Received: via spool by 55125-submit@debbugs.gnu.org id=B55125.165097720917459 (code B ref 55125); Tue, 26 Apr 2022 12:47:02 +0000 Received: (at 55125) by debbugs.gnu.org; 26 Apr 2022 12:46:49 +0000 Received: from localhost ([127.0.0.1]:37537 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njKae-0004X4-7R for submit@debbugs.gnu.org; Tue, 26 Apr 2022 08:46:48 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:36280) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njKac-0004Uj-4g for 55125@debbugs.gnu.org; Tue, 26 Apr 2022 08:46:46 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-Id:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=Ywpi9SvgHJECd+hI05JBFlaf22w/73tp3iMgY72hgKU=; b=e9p1CdmgBJQ3kKCpkF2xeSD4qo HGCrM86iXxK5QPddB7S+IWdN8QrD82fie6VB06KrR/3cyy/vcwIWNg4Ua7Phfot77Qfw/QiLz/72+ Es6ib67vZIYOMHM2aQvP2wb2+3Vkpk4wRn0W3h7ULy8kebSZDImp7yEQwAaghqyP+gYl2RJjS31SN LFZzoCdygci7yvHJz+IZmS1W+pGmZJxDuHkkN6MC+qEItMXFBzlxA5+msRW2JRDtrT8eJ9jp7YruN /nLmImbpsmj9ygmv73GJ7tJjJSRB2zH/tpVoQFDKgGAEC1C9XT5QbyO/qpwXLQVcScq4vsCduKpzV wWXt9k3w==; Received: from [192.168.2.1] (port=53438 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.95) (envelope-from ) id 1njKaZ-000HJN-QN; Tue, 26 Apr 2022 18:16:43 +0530 From: Arun Isaac Date: Tue, 26 Apr 2022 18:16:34 +0530 Message-Id: <20220426124639.17159-4-arunisaac@systemreboot.net> X-Mailer: git-send-email 2.35.1 In-Reply-To: <20220426124639.17159-1-arunisaac@systemreboot.net> References: <20220426124639.17159-1-arunisaac@systemreboot.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches tabixpp links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz should be listed in inputs even though they are already present implicitly in native-inputs. Else, cross-compilation will fail. * gnu/packages/bioinformatics.scm (tabixpp)[inputs]: Add bzip2 and xz. --- gnu/packages/bioinformatics.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e745fa9353..7cdbb748ef 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14277,7 +14277,7 @@ (define-public tabixpp (delete-file-recursively "htslib"))))) (build-system gnu-build-system) (inputs - (list htslib zlib)) + (list bzip2 htslib xz zlib)) (arguments (list #:make-flags #~(list (string-append "CC=" #$(cc-for-target)) (string-append "CXX=" #$(cxx-for-target))