@@ -2333,6 +2333,37 @@ (define-public r-sass
language, which is stable, powerful, and CSS compatible.")
(license license:expat)))
+(define-public r-saver
+ (package
+ (name "r-saver")
+ (version "1.1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "SAVER" version))
+ (sha256
+ (base32
+ "1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158"))))
+ (properties `((upstream-name . "SAVER")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-doparallel r-foreach r-glmnet r-iterators
+ r-matrix))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/mohuangx/SAVER")
+ (synopsis
+ "Recovery of the gene expression profile in noisy and sparse scRNA-seq data")
+ (description
+ "This package is an implementation of a regularized regression prediction
+and empirical Bayes method to recover the true gene expression profile in noisy
+and sparse single-cell RNA-seq data. In @dfn{single-cell RNA sequencing}
+(scRNA-seq) studies, only a small fraction of the transcripts present in each
+cell are sequenced. This leads to unreliable quantification of genes with low
+or moderate expression, which hinders downstream analysis. This package
+@dfn{single-cell analysis via expression recovery} (SAVER) implements an
+expression recovery method for unique molecule index (UMI)-based scRNA-seq data
+that borrows information across genes and cells to provide accurate expression
+estimates for all genes.")
+ (license license:gpl2)))
+
;; This package includes minified JavaScript files. When upgrading please
;; check that there are no new minified JavaScript files.
(define-public r-bslib