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[bug#54991,3/3] gnu: Add r-adductomicsr.

Message ID 20220417151046.2206-3-madalinionel.patrascu@mdc-berlin.de
State New
Headers show
Series [bug#54991,1/3] gnu: Add r-adductdata. | expand

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Commit Message

Mădălin Ionel Patrașcu April 17, 2022, 3:10 p.m. UTC
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.
---
 gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6e4ed31154..2cd4c89aa9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1605,6 +1605,50 @@  (define-public r-absseq
 ranking by fold-change and visualization.")
     (license license:gpl3+)))
 
+(define-public r-adductomicsr
+  (package
+    (name "r-adductomicsr")
+    (version "1.10.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "adductomicsR" version))
+              (sha256
+               (base32
+                "0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl"))))
+    (properties `((upstream-name . "adductomicsR")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-adductdata
+                             r-ade4
+                             r-annotationhub
+                             r-bootstrap
+                             r-data-table
+                             r-dosnow
+                             r-dplyr
+                             r-dt
+                             r-experimenthub
+                             r-fastcluster
+                             r-foreach
+                             r-fpc
+                             r-mzr
+                             r-orgmassspecr
+                             r-pastecs
+                             r-pracma
+                             r-rcppeigen
+                             r-reshape2
+                             r-rvest
+                             r-smoother
+                             r-zoo))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/adductomicsR")
+    (synopsis "Processing of adductomic mass spectral datasets")
+    (description
+     "This package @code{adductomicsR} processes data generated by the
+@dfn{second stage of mass spectrometry} (MS2) to identify potentially adducted
+peptides from spectra that has been corrected for mass drift and retention time
+drift and quantifies level mass spectral peaks from @dfn{first stage of mass
+spectrometry} (MS1) data.")
+    (license license:artistic2.0)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")