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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 21 Mar 2022 18:04:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 54510 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 54510@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.164788578727265 (code B ref -1); Mon, 21 Mar 2022 18:04:02 +0000 Received: (at submit) by debbugs.gnu.org; 21 Mar 2022 18:03:07 +0000 Received: from localhost ([127.0.0.1]:38164 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nWMN0-00075h-SH for submit@debbugs.gnu.org; Mon, 21 Mar 2022 14:03:07 -0400 Received: from lists.gnu.org ([209.51.188.17]:50242) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nWMMz-00075Z-2j for submit@debbugs.gnu.org; Mon, 21 Mar 2022 14:03:05 -0400 Received: from eggs.gnu.org ([209.51.188.92]:57050) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nWMMy-0008Lv-T1 for guix-patches@gnu.org; Mon, 21 Mar 2022 14:03:04 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:37089) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nWMMu-00033R-VK for guix-patches@gnu.org; Mon, 21 Mar 2022 14:03:04 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 05AAD16011B for ; Mon, 21 Mar 2022 19:02:49 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1647885768; x=1649700169; bh=6QpvWJGVq3amne74TB+RHa7Tf/ma4HBnRo3Qqi2C+LI=; b=J1DpdR7oHknc upmd0RpM0uMcprRQGyJ9500SUR8xkx/4q88tx/mjF+EqztrHUL1PhggRSGT/SA1I WZlVwipQTOUTEO0ISAJiEuWwDFLKUu6GbHHYGmFsc99uYHOE91RSvE/MbMCEbAbP FhQ57V7W8w6MAjQWai3ZBtDQ59kDW/M= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id DlPnptMsH5Zd for ; Mon, 21 Mar 2022 19:02:48 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Mon, 21 Mar 2022 19:02:48 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Mon, 21 Mar 2022 19:02:47 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Mon, 21 Mar 2022 19:02:42 +0100 Message-ID: <20220321180242.16823-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-8.6.1018-26786.001 X-TM-AS-Result: No-10--7.088400-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIyd mby1eQX7K1OIo1kOJjPuNT8xdcEnQwE+dA3RWUSvnVTWWiNp+v/F0kjYVlocoaY5ZGw7wyeHLor eibOPZp3VjMz0CrqjxAF2+0NMGAKJ0N7DjAdxZNTi8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV+J8Y JgRrgXF6qM74JOlZ6Y0beXMiPHBkyvf8daKsscvt7dmZzsaMUH X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.088400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-8.6.1018-26786.001 X-TM-SNTS-SMTP: CF7339BD8C2BAF5137AC9E48BE9B84F0FE323290BB6B64FFC05200BB22D7AA0D2000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-cycombine): New variable. --- gnu/packages/bioconductor.scm | 43 +++++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 55d397e5cf..ffa38fda3a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10066,6 +10066,49 @@ (define-public r-consensusclusterplus cluster count and membership by stability evidence in unsupervised analysis.") (license license:gpl2))) +;; This is the latest commit and it solves a bug from the latest release. +(define-public r-cycombine + (let ((commit "f18504bc83ff5daee2b5eb4b28f09abdaaa66698") (revision "1")) + (package + (name "r-cycombine") + (version (git-version "0.2.6" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/biosurf/cyCombine") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1fiwnik8iahg01732fik85xhz359x32f1xc59h443pdf7jancskm")))) + (properties `((upstream-name . "cyCombine"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-cytolib + r-dplyr + r-flowcore + r-ggplot2 + r-knitr + r-kohonen + r-magrittr + r-purrr + r-rcolorbrewer + r-readr + r-readxl + r-stringr + r-sva + r-tibble + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/biosurf/cyCombine") + (synopsis "Integration of single-cell cytometry datasets") + (description + "This package provides a method for combining single-cell cytometry +datasets, which increases the analytical flexibility and the statistical power +of the analyses while minimizing technical noise.") + (license license:expat)))) + (define-public r-cytolib (package (name "r-cytolib")