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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 18 Jan 2022 17:55:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53349 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53349@debbugs.gnu.org Cc: zimoun Received: via spool by 53349-submit@debbugs.gnu.org id=B53349.1642528480416 (code B ref 53349); Tue, 18 Jan 2022 17:55:05 +0000 Received: (at 53349) by debbugs.gnu.org; 18 Jan 2022 17:54:40 +0000 Received: from localhost ([127.0.0.1]:51625 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n9sgq-00006Z-1F for submit@debbugs.gnu.org; Tue, 18 Jan 2022 12:54:40 -0500 Received: from mail-wm1-f44.google.com ([209.85.128.44]:36611) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n9sgm-0008WR-OH for 53349@debbugs.gnu.org; Tue, 18 Jan 2022 12:54:37 -0500 Received: by mail-wm1-f44.google.com with SMTP id i187-20020a1c3bc4000000b0034d2ed1be2aso6331168wma.1 for <53349@debbugs.gnu.org>; Tue, 18 Jan 2022 09:54:36 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=FCiSitr3ygd0IqP3O+zTKq1GSVM4vTBN+d0tSF3I4aA=; b=ZxY8FiF0kJVuhfzYQoB4aQ6xBOrI/9vLhY4Zg3Z4cYXpF+O93GM/sxyXH1y+Cxncyv oXI+vrFor6Q/Dn/f/HMtUUpQN6A+4j27z9tcSOLQ7pPEYu22txpL82pn2GMFiVuDFA7L H1pHEMJIeB5FRI18ewtBml6/jKVpl4F61+P6l8/NR9Fqi8x4S35J0GtgKUtT15ndE2Ss O2niCK/gwVAGW1ali8Ns9Q79Vungxx2M2g6zF8iWmnRyIgaH9tcMxBG847P59CY6EhGh 5nRMOiAKKLhXtDsi8s5c2cIIz59GyFLm5LIsbcx8RfDYwjBSn7W+KPlt4O4hwP0meDwN /e3Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=FCiSitr3ygd0IqP3O+zTKq1GSVM4vTBN+d0tSF3I4aA=; b=MpeXyhYsN80ctbkPzchxggZMI6Jp3uhdNRKqB1v3WIM6RIl1xTW86xce+/XiemfhCH ouy7YezANP8ANgGYKnKMRBOEayQO4ulof+Jt+vC+MA1AZB0bTlTmWvM7nEgIFOmf02Je 1Z9dDuubw4uNdezgtXJbO+kldQr2z7FCotgC1V0bN/oimx8wct7Qxfjg6rp4p1/3xKAf Dsue7uopbFg48EjRe86Vk4yVnmiwt0yaDtQhYh3ehHxID2y5bXbffcL9nLQp3xYA/GmV RzWQj52EAbP3DyD/wCL9/lWzEmIqs8sohE2adnHWGjkK5xu3jUdztmqirhY09C4bhMgs mqZg== X-Gm-Message-State: AOAM532ro1ys7OzhH4i47d2PWaaxsHqewmjmE5jRehp22782dXcPgtZt PFqbL9U/La2VMLhd2QNXPx4mVZRIyKk= X-Google-Smtp-Source: ABdhPJxWBwYiJPoF/fAobxxpBQ6oNlnHPuhSGqQ6rMG6QY22sGqbHrnhUsIUOKBC5GbOrrBxTaO36A== X-Received: by 2002:a5d:6a45:: with SMTP id t5mr3807174wrw.643.1642528471098; Tue, 18 Jan 2022 09:54:31 -0800 (PST) Received: from localhost.localdomain ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id v5sm2989529wmh.19.2022.01.18.09.54.30 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 18 Jan 2022 09:54:30 -0800 (PST) From: zimoun Date: Tue, 18 Jan 2022 18:54:18 +0100 Message-Id: <20220118175418.1559782-9-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.34.0 In-Reply-To: <20220118175418.1559782-1-zimon.toutoune@gmail.com> References: <20220118175418.1559782-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-scseqcomm): New variable. --- gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b2bd7fbbc0..6e7974e2d7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7893,6 +7893,56 @@ (define-public r-misha analyze genomic data resulting from various experiments.") (license license:gpl2))) +(define-public r-scseqcomm + (let ((commit "01076e703999f1a5aa76419d821b50aebe2b777a") + (revision "0")) + (package + (name "r-scseqcomm") + (version (git-version "0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/sysbiobig/scseqcomm") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1fw5si47d6agnz5fibmp2b1sv08pbpwv1j71w57xbav9044i032q")) + ;; Delete bundled dependency. + (modules '((guix build utils))) + (snippet + '(delete-file-recursively "other_deps")))) + (build-system r-build-system) + (inputs + (list r-add2ggplot + r-chorddiag + r-doparallel + r-dplyr + r-foreach + ;;r-grid ;; listed in DESCRIPTION + r-gridextra + r-ggplot2 + r-gtable + r-htmlwidgets + r-igraph + r-matrix + ;;r-methods ;; listed in DESCRIPTION + r-org-hs-eg-db + r-psych + r-rcolorbrewer + r-rlang + r-scico + r-tidygraph + r-topgo)) + (native-inputs + (list r-knitr)) + (home-page "https://gitlab.com/sysbiobig/scseqcomm") + (synopsis "Inter- and intra- cellular signaling from single cell RNA-seq") + (description "This package is tools for analysing intercellular and +intracellular signaling from single cell RNA-seq (scRNA-seq) data.") + (license license:gpl3)))) + (define-public r-shaman (let ((commit "d6944e8ac7bd1dbd5c6cec646eafc1d19d0ca96f") (release "2.0")