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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 04 Jan 2022 22:49:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 53017 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 53017@debbugs.gnu.org Cc: efraim@flashner.co.il, zimoun Received: via spool by 53017-submit@debbugs.gnu.org id=B53017.164133651514694 (code B ref 53017); Tue, 04 Jan 2022 22:49:06 +0000 Received: (at 53017) by debbugs.gnu.org; 4 Jan 2022 22:48:35 +0000 Received: from localhost ([127.0.0.1]:39049 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n4sbO-0003od-Ut for submit@debbugs.gnu.org; Tue, 04 Jan 2022 17:48:35 -0500 Received: from mail-wm1-f53.google.com ([209.85.128.53]:36705) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n4sbH-0003lY-9r for 53017@debbugs.gnu.org; Tue, 04 Jan 2022 17:48:16 -0500 Received: by mail-wm1-f53.google.com with SMTP id n19-20020a7bc5d3000000b003466ef16375so624571wmk.1 for <53017@debbugs.gnu.org>; Tue, 04 Jan 2022 14:48:15 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=utPyNMNQajSzrgkKE7hyQ0cKtCJqHDpRhRQXOIh2DRI=; b=aa5VG7lfUnQOTjOL0367C5l80jdK8owh2rCO9Z2l4I4DKhXC9eltSSHYR4AKaZz1UZ FUJKveT3/p6qeeFEw6rk3xk+gwdS/+YmzAqOV8tW/B1D6jMv42Ul6ebvw30FWXv3UPcF m+XtGLOXJ3rEGOSQTk4m5wUhni91FHvhAK3r+rh4bUwVHT2sE9edt0uUi0xw6oTmF9ci dFbrFKTqxrzGGEGin68fb01f6sLhA7hYUHYczk11HRAsyzlCo3ewKyob/cPycQnZUkNl EYGWzw0VggKgLc6vC4Cd8O8rVupbKXcy1zDBw8yPm3zLCWOc2krig1D+Qt5U6XzP0Evn x5KQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=utPyNMNQajSzrgkKE7hyQ0cKtCJqHDpRhRQXOIh2DRI=; b=R/UbNrL5jqrayjQ4fIYGaTFx0K1TeS/67CdnmsOvJaw/n8alG4C/HpCHSPuP2BzkNl yTKP5FabEyZBSh04gXtmtqiHANB+5uuAh0iwHkZRWJQ3JvAerbo8TRoJ+SvHeRhJ2OrP fGvHR5P94uLy30MhjALee4zG5j/JVIPy6HVso+aC6gnUlDy20kRdrC3e6USuWY6eAQat jaGanaTKKn0Tt+s5Bk3SohlzJEXzxQiCxBuyAiwJe2oq3leUUNMRITHmSkSxGi7+LPqK A4CxTH+9VeTyaBstiIWUbmtH3q/o53/Um38B63rXC4ROm5eSmim/cUVgdicQF+iui0cq PZog== X-Gm-Message-State: AOAM532w/Y487wqWLmSDBtKauWA57Cz7qDbdidAVwDib7p3yNJXYyKlg F39cJsg3b2JG1BPxwIqqDgPINFtP1oM= X-Google-Smtp-Source: ABdhPJyxCeGse4z+aNG9pijnjQ//K2YJeVrQZqiUYSVukC8zd1VOEmXnwzW8ohsZjlAjfCtz69QBUg== X-Received: by 2002:a05:600c:3797:: with SMTP id o23mr411264wmr.178.1641336489822; Tue, 04 Jan 2022 14:48:09 -0800 (PST) Received: from localhost.localdomain ([193.48.40.117]) by smtp.gmail.com with ESMTPSA id c9sm732842wml.12.2022.01.04.14.48.09 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Jan 2022 14:48:09 -0800 (PST) From: zimoun Date: Tue, 4 Jan 2022 23:47:53 +0100 Message-Id: <20220104224755.1142897-15-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.33.1 In-Reply-To: <20220104224755.1142897-1-zimon.toutoune@gmail.com> References: <20220104224755.1142897-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-biosequences): New variable. --- gnu/packages/julia-xyz.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 04d0beeb96..e028f37a28 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -387,6 +387,37 @@ (define-public julia-biogenerics other types or methods used by other BioJulia packages.") (license license:expat)))) +(define-public julia-biosequences + (package + (name "julia-biosequences") + (version "2.0.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BioJulia/BioSequences.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0ns6zk0zvnsf4hlsys9ck2xrn20qck0b0aghh484vc6n458zq2gw")))) + (build-system julia-build-system) + (propagated-inputs + (list julia-biogenerics + julia-biosymbols + julia-combinatorics + julia-indexablebitvectors + julia-stablerngs + julia-twiddle)) + (native-inputs + (list julia-statsbase + julia-yaml)) + (home-page "https://biojulia.net/BioSequences.jl/stable/") + (synopsis "Data types and methods for common operations with biological sequences") + (description "This package provides Data types and methods for common +operations with biological sequences, including DNA, RNA, and amino acid +sequences.") + (license license:expat))) + (define-public julia-biosymbols (package (name "julia-biosymbols")