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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 30 Oct 2021 15:56:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 51513 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <51513@debbugs.gnu.org> Cc: rekado@elephly.net, =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmE=?= =?utf-8?b?yJljdQ==?= Received: via spool by 51513-submit@debbugs.gnu.org id=B51513.163560934531107 (code B ref 51513); Sat, 30 Oct 2021 15:56:02 +0000 Received: (at 51513) by debbugs.gnu.org; 30 Oct 2021 15:55:45 +0000 Received: from localhost ([127.0.0.1]:58240 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mgqht-00085e-Am for submit@debbugs.gnu.org; Sat, 30 Oct 2021 11:55:45 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:50365) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mgqhr-00085J-RN for 51513@debbugs.gnu.org; Sat, 30 Oct 2021 11:55:44 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 8A78216015F; Sat, 30 Oct 2021 17:55:37 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1635609337; x=1637423738; bh=3ljAQAtQpwNlBIcVBuONrpRsLM7CF9CNvRX KgjnZ70A=; b=dwApVRzTk5nTJGCf7q5ypuF6nAP9XJFl8WatFN/3j/1t4X/t7qg wd4t+YWaNA6oYSq0Vrg/4rapMinl+QS88f8oIxtYGUyKJJnwNq1SOP05jET6pCj0 IgjA9mOQjvVEvlFz2cxNBq2hhGZ+WdGXuVrnt86dNyhZIKqD4pSzmnXA= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id kZjcBWOu8S1Z; Sat, 30 Oct 2021 17:55:37 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS; Sat, 30 Oct 2021 17:55:37 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2308.15; Sat, 30 Oct 2021 17:55:36 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 30 Oct 2021 17:55:05 +0200 Message-ID: <20211030155506.28269-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.33.0 In-Reply-To: <20211030155506.28269-1-madalinionel.patrascu@mdc-berlin.de> References: <20211030155506.28269-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-8.6.1018-26500.001 X-TM-AS-Result: No-10--3.071300-8.000000 X-TMASE-MatchedRID: iZqcJIi7cAQsaaYlMvaOHAPZZctd3P4BNwe5zfGEu3r7fZJfDdCIXISC l3uvYUiSC6+Zjvylmgt6n3hIvN5dLetbninbl/qr34b00P59ZxlKhpFNiC3g3hHfiujuTbedxD3 3LnL++e46hh8gmT3PVhZi3foHKexSOWt3LpTk/GVOwmo0laDRbNJMQFCqw2r0cCpx4AmNeLdv2Z iuCbVzY25TfXRL8e4lQJVkw9PTCwiMbvtMrKaNZr09KAokwDFUGmvfI/BKJSxTvZg4AwMmOJ4CI KY/Hg3AGdQnQSTrKGPEQdG7H66TyN+E/XGDLHcM8tVOLURmWH/s/52aYm6b+hR55L69TR4dS1Ur mT/WvxEEcNRSx97ZcUxmy8d+XdgqU1smX/HioKcktL3TZ3RYZwYBFqQm66Qna4sJOPPPqqLapBr PywRGWvBBWAh1UbgUTloPhkiH7TGOEw7cMCn7Sw== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.071300-8.000000 X-TMASE-Version: SMEX-14.0.0.3092-8.6.1018-26500.001 X-TM-SNTS-SMTP: 53806B7BD0C8B3B53428007695667916F57838367375650B0FF0B4316CFC9F3B2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-stringdb): New variable. --- gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 90a0e1f288..f82427f831 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4337,6 +4337,39 @@ (define-public r-slingshot graph construction.") (license license:artistic2.0))) +(define-public r-stringdb + (package + (name "r-stringdb") + (version "2.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "STRINGdb" version)) + (sha256 + (base32 "1hvb73anhbf1g82nn5m11s783z6ihvlavf7p30w29qggxggnl6lm")))) + (properties `((upstream-name . "STRINGdb"))) + (build-system r-build-system) + (propagated-inputs + `(("r-gplots" ,r-gplots) + ("r-hash" ,r-hash) + ("r-igraph" ,r-igraph) + ("r-plotrix" ,r-plotrix) + ("r-plyr" ,r-plyr) + ("r-png" ,r-png) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcurl" ,r-rcurl) + ("r-sqldf" ,r-sqldf))) + (home-page "https://git.bioconductor.org/packages/STRINGdb") + (synopsis "Searching tool for the retrieval of interacting proteins database") + (description + "The @code{STRINGdb} package provides a R interface to the STRING +protein-protein interactions database. STRING (https://www.string-db.org) is a +database of known and predicted protein-protein interactions. The interactions +include direct (physical) and indirect (functional) associations. Each +interaction is associated with a combined confidence score that integrates the +various evidences.") + (license license:gpl2))) + (define-public r-structuralvariantannotation (package (name "r-structuralvariantannotation")