From patchwork Sun Oct 10 15:04:34 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Felix Gruber X-Patchwork-Id: 33739 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 6B31627BBE3; Sun, 10 Oct 2021 16:07:35 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,T_DKIM_INVALID, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 2079227BBE1 for ; Sun, 10 Oct 2021 16:07:35 +0100 (BST) Received: from localhost ([::1]:39318 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mZaQI-0002fn-7k for patchwork@mira.cbaines.net; Sun, 10 Oct 2021 11:07:34 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:32956) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mZaPn-0002OK-Ui for guix-patches@gnu.org; Sun, 10 Oct 2021 11:07:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:44124) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mZaPn-0003wB-Lx for guix-patches@gnu.org; Sun, 10 Oct 2021 11:07:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mZaPn-0006dT-H8 for guix-patches@gnu.org; Sun, 10 Oct 2021 11:07:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#50813] [PATCH v2 6/6] gnu: clipper: Disable non-deterministic test. Resent-From: Felix Gruber Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 10 Oct 2021 15:07:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50813 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50813@debbugs.gnu.org, Ludovic =?utf-8?q?Court=C3=A8s?= Cc: Felix Gruber Received: via spool by 50813-submit@debbugs.gnu.org id=B50813.163387840525453 (code B ref 50813); Sun, 10 Oct 2021 15:07:03 +0000 Received: (at 50813) by debbugs.gnu.org; 10 Oct 2021 15:06:45 +0000 Received: from localhost ([127.0.0.1]:55666 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mZaPU-0006cS-Vd for submit@debbugs.gnu.org; Sun, 10 Oct 2021 11:06:45 -0400 Received: from mout02.posteo.de ([185.67.36.66]:57261) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mZaPS-0006c8-Nx for 50813@debbugs.gnu.org; Sun, 10 Oct 2021 11:06:43 -0400 Received: from submission (posteo.de [89.146.220.130]) by mout02.posteo.de (Postfix) with ESMTPS id 116E7240101 for <50813@debbugs.gnu.org>; Sun, 10 Oct 2021 17:06:37 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1633878397; bh=1l0IrXmPqQxEMqu6A9KXxbVK3bIFLDcKRUpxPk6zPcA=; h=From:To:Cc:Subject:Date:From; b=liZJHwluY5ob5YsPW75+z1K0EAqVfALx1BqfJTGNtXtv1gMOrgOSrvvN5Ml5zafQi fs0lCD3vdKGyxy1Uv3FAPWRlv2QgYabeq9KHAo9zwfaA1xbdR/GkM3yras0fcjKSnU 5J0FiRf4ogjbioWrxdJ+uN27/iMWChioc1EnDVCZh3ofKlI6oFREM0st1D49H4pYZK IHzVuh+/F7G2Dbg7kKjxK/Jstu7qmcHg5lI5mhaSVlnDgKZHdl4BqDsysX9pPa0nn/ mRy3DxqEEbRBZPc26K4+Hu92qP5L1MlbCeOrD/moE17XpeNkgyiRJgO9URYsNzrTFY t2L9dHhJesHng== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4HS4yM5Fb6z9rxW; Sun, 10 Oct 2021 17:06:35 +0200 (CEST) From: Felix Gruber Date: Sun, 10 Oct 2021 15:04:34 +0000 Message-Id: <20211010150434.1966-7-felgru@posteo.net> In-Reply-To: <87zgrldwzk.fsf@gnu.org> References: <87zgrldwzk.fsf@gnu.org> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches This test fails/succeeds non-deterministically. * gnu/packages/bioinformatics.scm (clipper)[arguments]: Disable non-deterministic test test_get_FDR_cutoff_mean. --- gnu/packages/bioinformatics.scm | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 082e47bf5b..7dec74f0c0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -22,6 +22,7 @@ ;;; Copyright © 2021 Tim Howes ;;; Copyright © 2021 Hong Li ;;; Copyright © 2021 Simon Tournier +;;; Copyright © 2021 Felix Gruber ;;; ;;; This file is part of GNU Guix. ;;; @@ -2363,7 +2364,13 @@ databases.") (let ((out (assoc-ref outputs "out"))) (for-each make-file-writable (find-files out "\\.gz$")) - #t)))))) + #t))) + (add-after 'unpack 'disable-nondeterministic-test + (lambda _ + ;; This test fails/succeeds non-deterministically. + (substitute* "clipper/test/test_call_peak.py" + (("test_get_FDR_cutoff_mean") "_test_get_FDR_cutoff_mean")) + #t))))) (inputs `(("htseq" ,htseq) ("python-pybedtools" ,python-pybedtools)