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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 13 Sep 2021 14:21:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50570 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50570@debbugs.gnu.org Cc: zimoun Received: via spool by 50570-submit@debbugs.gnu.org id=B50570.163154284132337 (code B ref 50570); Mon, 13 Sep 2021 14:21:02 +0000 Received: (at 50570) by debbugs.gnu.org; 13 Sep 2021 14:20:41 +0000 Received: from localhost ([127.0.0.1]:46545 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmp6-0008PV-PE for submit@debbugs.gnu.org; Mon, 13 Sep 2021 10:20:41 -0400 Received: from mail-wr1-f45.google.com ([209.85.221.45]:38774) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmp2-0008P2-Bf for 50570@debbugs.gnu.org; Mon, 13 Sep 2021 10:20:37 -0400 Received: by mail-wr1-f45.google.com with SMTP id u16so14987532wrn.5 for <50570@debbugs.gnu.org>; Mon, 13 Sep 2021 07:20:36 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=BNx8u5VoWHd6V2my4Rnd5c2LXZYMXWxcv+SHTttgd+o=; b=VW2673wFC2ZQdkEHAmLX0WXsZFqb5OfYMQ9rt+RygMbZ1ZclTW7IUwtR/DJRazhLil tBV8X8vCobzLTZ6Ctzpvys/8fbyaVRr6Bh77xk1cLh1Az4drdqgIB767q+uJ7+/dKy9G 7IMluIx6BfA/QHOahe+mUOKngy4ZlJK3nc9m0Ucxcpze2rN9EcLtT67HRNxbcekcnHZf 1QyfL1Vkb6xTsOHukNVxd9iXWNo8Tem9B0v3EPeqsBShwWaeNwbtDjwGcma/aNrfxH5h ND2aT8JN10G3jsCmrWTwd7AD7RzXXHiW/1h/OSsYSz+4kahJVZgPP2aLE18O/hTSPlgU tQWQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=BNx8u5VoWHd6V2my4Rnd5c2LXZYMXWxcv+SHTttgd+o=; b=Imy/7qwYH7JUd7yK0aOeI22cBzlBISlK1jw+gW+Xo3mj1rlNypfzA4kpfOHYcyfrM/ xXbej7omisH9v+i0V/G9YKa36Ljr4FzWUEl8W21+vWSlSYFnlJSu9qZYxldqAn9Y1IvB kQBxHqBQOlYQqvlFOYKxt5s66NlDKO2V9YzV2PSIuBw/7Msu3beZQwrkLKejSPgtYt2I z3cG5wNBFjHL2wYi9tyvQ4OFO3ClYp+2L20p0sD40Tk5/bi9WE2MIgBW3phulqS0Ir2C VuZ6YJaaXQI6a0lzaNIEjjIT6OgCWDTVNTSYnZQ+cVBGTpDNBzI+qqU0dXjTSVmhngF0 Z7lg== X-Gm-Message-State: AOAM533m0YE0bQo5OoccWY1+qCHCgRIV9lLvuwTgG1OxdHMIyhgwMwDm UMzi+mNK4YKMyGqViey2pu2EyF2kkpM= X-Google-Smtp-Source: ABdhPJwfcM4ERb/I00P/lmETRXgiJHl86lCMqsrjV52emwCe8jfpxOo4VY9O4EDYHEX7U9/IwsP/og== X-Received: by 2002:a5d:4f02:: with SMTP id c2mr13249262wru.10.1631542830760; Mon, 13 Sep 2021 07:20:30 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.117]) by smtp.gmail.com with ESMTPSA id j27sm1429380wms.6.2021.09.13.07.20.30 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 13 Sep 2021 07:20:30 -0700 (PDT) From: zimoun Date: Mon, 13 Sep 2021 16:20:28 +0200 Message-Id: <20210913142028.522087-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.32.0 In-Reply-To: <20210913142028.522087-1-zimon.toutoune@gmail.com> References: <20210913142028.522087-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-presto): New variable. --- gnu/packages/bioinformatics.scm | 34 +++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c3ab0ce354..647feff9ec 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21,6 +21,7 @@ ;;; Copyright © 2020 Bonface Munyoki Kilyungi ;;; Copyright © 2021 Tim Howes ;;; Copyright © 2021 Hong Li +;;; Copyright © 2021 Simon Tournier ;;; ;;; This file is part of GNU Guix. ;;; @@ -7417,6 +7418,39 @@ sequence.") (supported-systems '("i686-linux" "x86_64-linux")) (license license:bsd-3))) +(define-public r-presto + (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") + (revision "0")) + (package + (name "r-presto") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/immunogenomics/presto") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1c3fmag4r4p2lvbvxlxyck9dvfw1prbwcl9665mmlx4a35750hk8")))) + (properties `((upstream . "presto"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-deseq2" ,r-deseq2) + ("r-dplyr" ,r-dplyr) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-reshape2" ,r-reshape2) + ("r-rlang" ,r-rlang) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/immunogenomics/presto") + (synopsis "Fast Functions for Differential Expression using Wilcox and AUC") + (description "This package performs a fast Wilcoxon rank sum test and +auROC analysis.") + (license license:gpl3)))) + (define-public r-snapatac (package (name "r-snapatac")