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References: <20210913141812.521898-1-zimon.toutoune@gmail.com> In-Reply-To: <20210913141812.521898-1-zimon.toutoune@gmail.com> Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 13 Sep 2021 14:21:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 50570 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 50570@debbugs.gnu.org Cc: zimoun Received: via spool by 50570-submit@debbugs.gnu.org id=B50570.163154283732326 (code B ref 50570); Mon, 13 Sep 2021 14:21:01 +0000 Received: (at 50570) by debbugs.gnu.org; 13 Sep 2021 14:20:37 +0000 Received: from localhost ([127.0.0.1]:46543 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmp3-0008PK-Gf for submit@debbugs.gnu.org; Mon, 13 Sep 2021 10:20:37 -0400 Received: from mail-wr1-f53.google.com ([209.85.221.53]:40656) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mPmp2-0008P1-3t for 50570@debbugs.gnu.org; Mon, 13 Sep 2021 10:20:36 -0400 Received: by mail-wr1-f53.google.com with SMTP id q26so14978645wrc.7 for <50570@debbugs.gnu.org>; Mon, 13 Sep 2021 07:20:36 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=ly/QNZgEh14QPgEdUe6C8AVzWdV9pfMVb+PmwiHdhBk=; b=q7tKMzESQczPkVuhsi9Aj8y0ZYp/neqvQ11/2AKI/+4xyT109W7N/8ufahxVHhYLgw g6R8Dt9nIm/BJChr9vWS4MDSpYMS6sZKclIVZhwGq2abtKXBWDbB94aAewkw3watVahl nZNJiCuBiK8wJ2i8TxR1brITAqxGxdy+lhBcMMNDRMX87BFKCMjNwxMXXqgPHFiVQ6Ad cOzeZIzAjGtBJ707CeDTso8C9jV3kUfFhYKwVoHvpgMGqQH+0OJQywM5etCjqtLMXJTm aByLTSUw/jVS2rAjrWf4s+qhuOO1Q58YFEX2bSjysNbbJe1yZb1jI70WtyZ0LjCvJwgb VL0g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=ly/QNZgEh14QPgEdUe6C8AVzWdV9pfMVb+PmwiHdhBk=; b=cP4lUuw+6DxdOmEe7GQmlhBPfiElEftiTMCgmd8n7KORGT4lKyBHba8WwCqobmP7dS NIjodvw5Ihon39Q6BxUzFb4Gw69lne6B3ikvbPEAyBaKvqRQiDHj6T3HPW/7D57juLS6 g24WFYj5+gy+hzeWVm/5FQgeJ79W8THW3dK1duESsRtLTMxEL1ZK9xE5LDTRwQjS/+mz fx2FcEARdqAslPlR536mq110UGrPmzOGGVyY/4DDYAsQ1TyzE3iGbOOv+15NNrVTi58P TJJ8UO9Yq73y4qrxHRVgMcvsv/ikbZAj0rxLpvICt/WNZDYC6JIpttKe/XhzIKuW6Av/ MriA== X-Gm-Message-State: AOAM530Hb0rfgWm9dG9RWZHhTRp/a1WKMMt6WM6ckmkpMMjSRM8NmXaG 6PTK4PD52ROcQAOrxiyZmc96jYcAIJ0= X-Google-Smtp-Source: ABdhPJw46uHWPc36Agl1HGEdkX7pS+36LWDHmiYANRXqWcYWqXHU+ZGotPrtuM8iUOnokEu5SXlX/g== X-Received: by 2002:adf:d1a4:: with SMTP id w4mr12953379wrc.233.1631542830329; Mon, 13 Sep 2021 07:20:30 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.117]) by smtp.gmail.com with ESMTPSA id j27sm1429380wms.6.2021.09.13.07.20.29 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 13 Sep 2021 07:20:30 -0700 (PDT) From: zimoun Date: Mon, 13 Sep 2021 16:20:27 +0200 Message-Id: <20210913142028.522087-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.32.0 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-simplifyenrichment): New variable. --- gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 25202410e5..e59ba07d23 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4236,6 +4236,46 @@ purposes. The package also contains legacy support for early single-end, ungapped alignment formats.") (license license:artistic2.0))) +(define-public r-simplifyenrichment + (package + (name "r-simplifyenrichment") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "simplifyEnrichment" version)) + (sha256 + (base32 + "0rqa414kvyjjmj4932zk39rqa14z13b57rkrxdrf16jmq2r437vh")))) + (properties + `((upstream-name . "simplifyEnrichment"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biocgenerics" ,r-biocgenerics) + ("r-circlize" ,r-circlize) + ("r-clue" ,r-clue) + ("r-cluster" ,r-cluster) + ("r-complexheatmap" ,r-complexheatmap) + ("r-digest" ,r-digest) + ("r-getoptlong" ,r-getoptlong) + ("r-go-db" ,r-go-db) + ("r-gosemsim" ,r-gosemsim) + ("r-matrix" ,r-matrix) + ("r-org-hs-eg-db" ,r-org-hs-eg-db) + ("r-proxyc" ,r-proxyc) + ("r-slam" ,r-slam) + ("r-tm" ,r-tm))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/jokergoo/simplifyEnrichment") + (synopsis "Simplify Functional Enrichment Results") + (description "This package provides a new clustering algorithm, binary +cut, for clustering similarity matrices of functional terms is implemeted in +this package. It also provideds functionalities for visualizing, summarizing +and comparing the clusterings.") + (license license:expat))) + + (define-public r-trajectoryutils (package (name "r-trajectoryutils")