From patchwork Fri May 21 20:25:41 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 29458 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 1C6EC27BC83; Fri, 21 May 2021 21:28:14 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id D5E6627BC78 for ; Fri, 21 May 2021 21:28:13 +0100 (BST) Received: from localhost ([::1]:35560 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lkBkj-0004QE-0k for patchwork@mira.cbaines.net; Fri, 21 May 2021 16:28:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:52426) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lkBka-0004LC-HT for guix-patches@gnu.org; Fri, 21 May 2021 16:28:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:54486) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lkBka-0002wD-9S for guix-patches@gnu.org; Fri, 21 May 2021 16:28:04 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lkBka-0000Lq-67 for guix-patches@gnu.org; Fri, 21 May 2021 16:28:04 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#48575] [PATCH 09/50] gnu: r-impute: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 21 May 2021 20:28:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48575 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48575@debbugs.gnu.org Cc: zimoun Received: via spool by 48575-submit@debbugs.gnu.org id=B48575.1621628832952 (code B ref 48575); Fri, 21 May 2021 20:28:04 +0000 Received: (at 48575) by debbugs.gnu.org; 21 May 2021 20:27:12 +0000 Received: from localhost ([127.0.0.1]:37710 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBjj-0000FB-Pa for submit@debbugs.gnu.org; Fri, 21 May 2021 16:27:12 -0400 Received: from mail-wm1-f43.google.com ([209.85.128.43]:35337) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBjJ-00008a-1t for 48575@debbugs.gnu.org; Fri, 21 May 2021 16:26:46 -0400 Received: by mail-wm1-f43.google.com with SMTP id z19-20020a7bc7d30000b029017521c1fb75so8082897wmk.0 for <48575@debbugs.gnu.org>; Fri, 21 May 2021 13:26:45 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=UlvPVd/RNzKO8kaBX7Chi2pGsq/foEj0l7hjxhhY4IU=; b=E/7ckTKmo5ndqOWKd3jjznAKHniFvTrgTGh2u8ULpFdAz7WtDwgeK6ODKpeRdvXaUY 5Ra6PNi1am9Ambe6Ty+PzmqYo4VT8HOERZHo2NY6lkJjNC6XAK/QIJ1nxSAxxDxmD1Vy 4FXTym2g1wjEnNtJt0RzdOZW7q9TPMpn0s/CQmMl90JdE56AxG66Atbv7LrDIlfmjF6v MT7skQK4pT8XKRbBDBMx5JZwQpLXzNQ4bea0tju95OQlnzERu6w2H5390jeaOnpygswx Bpe6GUAYf3vE6g0bNAh5Yh9cgiDkmXO/gZyneSyq9OdxDhqSL1WXNcDIYr11NqKo8hfW JQkA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=UlvPVd/RNzKO8kaBX7Chi2pGsq/foEj0l7hjxhhY4IU=; b=VADy+jqa6t5y11m6GWg+H9yYctd+kjXx2bowyFPDC9bfn8wB8P1/KxQaKPIETeb7lA Dfn7MxuJrXkc/5YO/rq01m/S6k6syaTfCLXfc5rX2EZE2Sx6MQb6lsSh/ZwpZv2ODKYM bzviPCbq7UrzaWDddwLtNpzLOycYT8xZLDYqyGXkRZ/YBmfAWoxiKU2vmsPLvqTzlRpN D5TiRmAXkYxOzPIM9pvlzzRw++XAAcqwvuXACcdi9hKn2fbT0FQZbNtFWdrWaOUmp1N+ IW47LsqzWfkASY5ZlvUmKV2i96VKbJG3vNqeQW5U4A3lauOGlNjhpzcDkBmq4/SnYFRN v96Q== X-Gm-Message-State: AOAM530glmHs4J3bWzh5AavqewgIxn4VOtdGqr3eyKgS1kgraHWjTf3e AQZkq36JUZOWA+H9Ie0UcafQwDduIGI= X-Google-Smtp-Source: ABdhPJzEeTlCx3iTTwvMmM7LUEr9wzvjd+gcBJH9eVm/ZdrZkFAFSRtujAQlZX+hYPfZSfIVNm2U9w== X-Received: by 2002:a05:600c:49a2:: with SMTP id h34mr10862381wmp.64.1621628799534; Fri, 21 May 2021 13:26:39 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id j18sm542711wmq.27.2021.05.21.13.26.39 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 21 May 2021 13:26:39 -0700 (PDT) From: zimoun Date: Fri, 21 May 2021 22:25:41 +0200 Message-Id: <20210521202622.26591-9-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210521202622.26591-1-zimon.toutoune@gmail.com> References: <20210521202622.26591-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-impute): Move from here... * gnu/packages/bioconductor.scm (r-impute): ...to here. --- gnu/packages/bioconductor.scm | 20 ++++++++++++++++++++ gnu/packages/bioinformatics.scm | 20 -------------------- 2 files changed, 20 insertions(+), 20 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f9aa34d254..0b40d70397 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2294,6 +2294,26 @@ Enrichment Analysis} (GSEA).") the Human Protein Atlas project.") (license license:artistic2.0))) +(define-public r-impute + (package + (name "r-impute") + (version "1.64.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "impute" version)) + (sha256 + (base32 + "1pnjasw9i19nmxwjzrd9jbln31yc5jilfvwk414ya5zbqfsazvxa")))) + (native-inputs + `(("gfortran" ,gfortran))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/impute") + (synopsis "Imputation for microarray data") + (description + "This package provides a function to impute missing gene expression +microarray data, using nearest neighbor averaging.") + (license license:gpl2+))) + (define-public r-limma (package (name "r-limma") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 28893c40e7..ef5c1a3323 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7873,26 +7873,6 @@ including VCF header and contents in RDF and JSON.") information about the latest version of the Gene Ontologies.") (license license:artistic2.0))) -(define-public r-impute - (package - (name "r-impute") - (version "1.64.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "impute" version)) - (sha256 - (base32 - "1pnjasw9i19nmxwjzrd9jbln31yc5jilfvwk414ya5zbqfsazvxa")))) - (native-inputs - `(("gfortran" ,gfortran))) - (build-system r-build-system) - (home-page "https://bioconductor.org/packages/impute") - (synopsis "Imputation for microarray data") - (description - "This package provides a function to impute missing gene expression -microarray data, using nearest neighbor averaging.") - (license license:gpl2+))) - (define-public r-seqpattern (package (name "r-seqpattern")