@@ -999,6 +999,30 @@ from Illumina 450k methylation arrays.")
chromstaR package.")
(license license:gpl3)))
+(define-public r-copyhelper
+ (package
+ (name "r-copyhelper")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "CopyhelpeR" version 'experiment))
+ (sha256
+ (base32
+ "0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
+ (properties `((upstream-name . "CopyhelpeR")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/CopyhelpeR/")
+ (synopsis "Helper files for CopywriteR")
+ (description
+ "This package contains the helper files that are required to run the
+Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
+and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
+mm10. In addition, it contains a blacklist filter to remove regions that
+display copy number variation. Files are stored as GRanges objects from the
+GenomicRanges Bioconductor package.")
+ (license license:gpl2)))
+
(define-public r-genelendatabase
(package
(name "r-genelendatabase")
@@ -8312,32 +8312,6 @@ analysis, variant tools is project based and provides a whole set of tools to
manipulate and analyze genetic variants.")
(license license:gpl3+)))
-(define-public r-copyhelper
- (package
- (name "r-copyhelper")
- (version "1.6.0")
- (source
- (origin
- (method url-fetch)
- (uri (string-append "https://bioconductor.org/packages/release/"
- "data/experiment/src/contrib/CopyhelpeR_"
- version ".tar.gz"))
- (sha256
- (base32
- "0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
- (properties `((upstream-name . "CopyhelpeR")))
- (build-system r-build-system)
- (home-page "https://bioconductor.org/packages/CopyhelpeR/")
- (synopsis "Helper files for CopywriteR")
- (description
- "This package contains the helper files that are required to run the
-Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
-and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
-mm10. In addition, it contains a blacklist filter to remove regions that
-display copy number variation. Files are stored as GRanges objects from the
-GenomicRanges Bioconductor package.")
- (license license:gpl2)))
-
(define-public r-copywriter
(package
(name "r-copywriter")