From patchwork Fri May 21 20:26:17 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 29478 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id CE47327BC83; Fri, 21 May 2021 21:31:08 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 26F9C27BC78 for ; Fri, 21 May 2021 21:31:08 +0100 (BST) Received: from localhost ([::1]:42370 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lkBnX-00013e-AS for patchwork@mira.cbaines.net; Fri, 21 May 2021 16:31:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:52624) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lkBko-0005Gr-CU for guix-patches@gnu.org; Fri, 21 May 2021 16:28:18 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:54521) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lkBko-00033n-3k for guix-patches@gnu.org; Fri, 21 May 2021 16:28:18 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lkBko-0000Q0-0X for guix-patches@gnu.org; Fri, 21 May 2021 16:28:18 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#48575] [PATCH 45/50] gnu: r-annotationfilter: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 21 May 2021 20:28:17 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48575 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48575@debbugs.gnu.org Cc: zimoun Received: via spool by 48575-submit@debbugs.gnu.org id=B48575.16216288581239 (code B ref 48575); Fri, 21 May 2021 20:28:17 +0000 Received: (at 48575) by debbugs.gnu.org; 21 May 2021 20:27:38 +0000 Received: from localhost ([127.0.0.1]:37781 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBk9-0000Jp-T3 for submit@debbugs.gnu.org; Fri, 21 May 2021 16:27:38 -0400 Received: from mail-wm1-f52.google.com ([209.85.128.52]:44804) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBja-0000CP-3f for 48575@debbugs.gnu.org; Fri, 21 May 2021 16:27:08 -0400 Received: by mail-wm1-f52.google.com with SMTP id y184-20020a1ce1c10000b02901769b409001so7810193wmg.3 for <48575@debbugs.gnu.org>; Fri, 21 May 2021 13:27:02 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=jADkjOcECaxKaVMHW1v5oI4SxtTDJxJxXTNJ9A7zISI=; b=WiVfUHaG3giMdEvTNHS16EXOZzQbKmS0GKVGUqg+OfLAotBpXReZxTM3WEcNgxqut1 8Fw2UVSZkh2bTrfDDcc5SQJyo4c6ZVpuAZdocmL3X4oPZxFPYoVF2I2X/7ESWhRdBfmV dYCmacemttBc5yZ4P/Xq/PXziHy2E3niBFe7vpgxmSAt9HTobDRI7p2BW3xpePWHJJNF kaHmxWiTpqOHSS0949uERjVsLnrLVVV5JOojoJhL5nwpcX3zUjeMD6J8VyEJTfy6PvLg rInqDo7UI+8+4VG2np/rgQ6IL/7L1TZSwHGj4389uZIKkgm05Z4pjjoYqNm9YzsR6lzu tfhA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=jADkjOcECaxKaVMHW1v5oI4SxtTDJxJxXTNJ9A7zISI=; b=lds6a+PoEiDkNkaCcTO16CZ79LRqPQFIiQPq449tKr/UZm9SYbaCh5Pg/Vce4M6lAq W7NC7qWuPRnhiTw4E0gJbr8w6J0mpYPgUcYSfYhMXWRA6pBAS2M5EF7IjcF1ZTx8QhD3 D/7geW1oMEyGtzgrlRpIcuXzR7PqbMF6szlgyVdhJdIEiBXVNrFwOj6Nb7FSnsHHrGrp mf/l6WQyfTOKRcdAcSBggZOVBYLe/AnMsYPjvHfGQopNhamO5lEAwZUQxa9v1Mb7jrvY R4Ubsma3nYvsPlaFobzU3fx8Dkd/RfGVu8iIyqiHKOgHFraam1tn7BQZnYWG7lLkQZe4 jbsw== X-Gm-Message-State: AOAM5334B7a3Q0urvoO8hZ5+ZLbJkO9V34xcmOG8a2gjqxD/1Im3Vs/t 7GdsE3R3S6jfuqZunP0WqWH8+DtfduQ= X-Google-Smtp-Source: ABdhPJwNGX8lKVkVTpbXm4tZ+H9spArajvQIUpHHHU6V+vWV/B5lbQIMQtWmap8ei83/K8hHaZCI0A== X-Received: by 2002:a05:600c:8a9:: with SMTP id l41mr10626387wmp.73.1621628815542; Fri, 21 May 2021 13:26:55 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id j18sm542711wmq.27.2021.05.21.13.26.55 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 21 May 2021 13:26:55 -0700 (PDT) From: zimoun Date: Fri, 21 May 2021 22:26:17 +0200 Message-Id: <20210521202622.26591-45-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210521202622.26591-1-zimon.toutoune@gmail.com> References: <20210521202622.26591-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here... * gnu/packages/bioconductor.scm (r-annotationfilter): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 26 -------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8695f13ed8..87b879ad94 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1804,6 +1804,32 @@ microarrays.") annotation data packages using SQLite data storage.") (license license:artistic2.0))) +(define-public r-annotationfilter + (package + (name "r-annotationfilter") + (version "1.14.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AnnotationFilter" version)) + (sha256 + (base32 + "0npk0laa2rc93rsh6yikj886zf2fl53a050j07fj9w67j0q0h3s9")))) + (properties + `((upstream-name . "AnnotationFilter"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicranges" ,r-genomicranges) + ("r-lazyeval" ,r-lazyeval))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/Bioconductor/AnnotationFilter") + (synopsis "Facilities for filtering Bioconductor annotation resources") + (description + "This package provides classes and other infrastructure to implement +filters for manipulating Bioconductor annotation resources. The filters are +used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.") + (license license:artistic2.0))) + (define-public r-annotationforge (package (name "r-annotationforge") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2907d65b38..7ad51d3518 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8029,32 +8029,6 @@ package, and for letting R applications work on datasets that are larger than the available RAM.") (license license:artistic2.0))) -(define-public r-annotationfilter - (package - (name "r-annotationfilter") - (version "1.14.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "AnnotationFilter" version)) - (sha256 - (base32 - "0npk0laa2rc93rsh6yikj886zf2fl53a050j07fj9w67j0q0h3s9")))) - (properties - `((upstream-name . "AnnotationFilter"))) - (build-system r-build-system) - (propagated-inputs - `(("r-genomicranges" ,r-genomicranges) - ("r-lazyeval" ,r-lazyeval))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://github.com/Bioconductor/AnnotationFilter") - (synopsis "Facilities for filtering Bioconductor annotation resources") - (description - "This package provides classes and other infrastructure to implement -filters for manipulating Bioconductor annotation resources. The filters are -used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.") - (license license:artistic2.0))) - (define-public emboss (package (name "emboss")