From patchwork Fri May 21 20:26:16 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 29475 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D02EF27BC81; Fri, 21 May 2021 21:30:46 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 47DDA27BC78 for ; Fri, 21 May 2021 21:30:46 +0100 (BST) Received: from localhost ([::1]:41508 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lkBnB-0000Qp-B4 for patchwork@mira.cbaines.net; Fri, 21 May 2021 16:30:45 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:52620) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lkBkn-0005F9-Vv for guix-patches@gnu.org; Fri, 21 May 2021 16:28:18 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:54520) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lkBkn-00033b-NQ for guix-patches@gnu.org; Fri, 21 May 2021 16:28:17 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lkBkn-0000Pt-Jq for guix-patches@gnu.org; Fri, 21 May 2021 16:28:17 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#48575] [PATCH 44/50] gnu: r-rhdf5filters: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 21 May 2021 20:28:17 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48575 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48575@debbugs.gnu.org Cc: zimoun Received: via spool by 48575-submit@debbugs.gnu.org id=B48575.16216288581232 (code B ref 48575); Fri, 21 May 2021 20:28:17 +0000 Received: (at 48575) by debbugs.gnu.org; 21 May 2021 20:27:38 +0000 Received: from localhost ([127.0.0.1]:37779 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBk9-0000Jh-GV for submit@debbugs.gnu.org; Fri, 21 May 2021 16:27:37 -0400 Received: from mail-wm1-f50.google.com ([209.85.128.50]:35357) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBjZ-0000CE-K1 for 48575@debbugs.gnu.org; Fri, 21 May 2021 16:27:08 -0400 Received: by mail-wm1-f50.google.com with SMTP id z19-20020a7bc7d30000b029017521c1fb75so8083171wmk.0 for <48575@debbugs.gnu.org>; Fri, 21 May 2021 13:27:01 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=BJbtryq3YhLCmqQPkqA9v0snCtQsUTKzqUtFY2r2O24=; b=Rhxn7+MGJC/AfSPgIcDC48X7FhncD3XXkdrKR5H3cclq6IZQ7BqPRxCayAO2wgWUVI wDbt+pPd6a0x4CX+87E0eAiqKaIxwN0dIA71Pri0TEFByRT1o0L8cuD8JV4hkgXRDm+S dVbigmQwuvnUhedTfBiNpoSFFT4P1KyLzWdgHLyA7wo+w5mY0jComxgmgp6HifyLU1JE /xvgNjccyQnK3f2AOAJ9f5096GSLjc7teAANCPZmKHG1TNM7CZII4HR5RsdNMItTsvJz BFLfUur1S6CwDZL6wA6gPhOMvL8GzrEJYJsSQfYHJz6QHW6AP5tuzXmPw0nXJ8z0RVQe pTHQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=BJbtryq3YhLCmqQPkqA9v0snCtQsUTKzqUtFY2r2O24=; b=gxgFYs5sl+nDnrqyUNZGTaGIQNIAGmkMHhxCugSsyAE5SY31I7l82cdkFNnPKJBkEu NsnZAMuwp/saZmsLXBDDwFfQr3fHAapOXzWca7Zz6ViVF3UTvavgO4e2rBFNygnt0ioz OsFs3IQiTpi1ghKkg5gUgUB2H4HsGswjnNTGTCylR1BDIZCXtK4YsYD6ySexL6JR48+W 9hRS/uF1epit8Ip4V4yyp6UByhZ/+sHGxk8i4boXnnO6+9TSQBqtO0EfGCbXJaN02PxA DSq4vNf1MLpkV/jK/H9WR6uSIjo58BMwQL3MPDJ+sNcy852gfKUM5DEaGgA2HzLdoLN0 QqtQ== X-Gm-Message-State: AOAM5302A5wzxXWk2eyHnNWlP3XRXDUtaipbmHV5TMOVWtf4vkogrbHz keU1wItNytcoTWY9wPeQPoQy2SeSjqI= X-Google-Smtp-Source: ABdhPJzHGeq5dGtwv3M5vJ/3ghmHpDmwehnBf/HfIY/UHnwAncgc6gkMJ44faDDFKX/Pmge8cTaE9Q== X-Received: by 2002:a1c:c90f:: with SMTP id f15mr10711403wmb.142.1621628815129; Fri, 21 May 2021 13:26:55 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id j18sm542711wmq.27.2021.05.21.13.26.54 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 21 May 2021 13:26:54 -0700 (PDT) From: zimoun Date: Fri, 21 May 2021 22:26:16 +0200 Message-Id: <20210521202622.26591-44-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210521202622.26591-1-zimon.toutoune@gmail.com> References: <20210521202622.26591-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-rhdf5filters): Move from here... * gnu/packages/bioconductor.scm (r-rhdf5filters): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 26 -------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 30d4844ae4..8695f13ed8 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3482,6 +3482,32 @@ reports together for a particular project that can be viewed in a web browser.") (license license:artistic2.0))) +(define-public r-rhdf5filters + (package + (name "r-rhdf5filters") + (version "1.2.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "rhdf5filters" version)) + (sha256 + (base32 + "1bjlgc76vx0z81s8vci9ln1d2s3b157qnm32xs36mnyjk31ivasz")))) + (properties `((upstream-name . "rhdf5filters"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rhdf5lib" ,r-rhdf5lib))) + (inputs + `(("zlib" ,zlib))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/grimbough/rhdf5filters") + (synopsis "HDF5 compression filters") + (description + "This package provides a collection of compression filters for use with +HDF5 datasets.") + (license license:bsd-2))) + (define-public r-rsamtools (package (name "r-rsamtools") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 83d6797809..2907d65b38 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7990,32 +7990,6 @@ bound and non bound genomic regions to accurately identify transcription factors bound at the specific regions.") (license license:gpl2+))) -(define-public r-rhdf5filters - (package - (name "r-rhdf5filters") - (version "1.2.1") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "rhdf5filters" version)) - (sha256 - (base32 - "1bjlgc76vx0z81s8vci9ln1d2s3b157qnm32xs36mnyjk31ivasz")))) - (properties `((upstream-name . "rhdf5filters"))) - (build-system r-build-system) - (propagated-inputs - `(("r-rhdf5lib" ,r-rhdf5lib))) - (inputs - `(("zlib" ,zlib))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://github.com/grimbough/rhdf5filters") - (synopsis "HDF5 compression filters") - (description - "This package provides a collection of compression filters for use with -HDF5 datasets.") - (license license:bsd-2))) - (define-public r-rhdf5 (package (name "r-rhdf5")