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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 21 May 2021 20:28:11 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48575 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48575@debbugs.gnu.org Cc: zimoun Received: via spool by 48575-submit@debbugs.gnu.org id=B48575.16216288521127 (code B ref 48575); Fri, 21 May 2021 20:28:11 +0000 Received: (at 48575) by debbugs.gnu.org; 21 May 2021 20:27:32 +0000 Received: from localhost ([127.0.0.1]:37751 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBk3-0000I0-MN for submit@debbugs.gnu.org; Fri, 21 May 2021 16:27:32 -0400 Received: from mail-wr1-f53.google.com ([209.85.221.53]:39714) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBjR-0000AV-HD for 48575@debbugs.gnu.org; Fri, 21 May 2021 16:26:54 -0400 Received: by mail-wr1-f53.google.com with SMTP id v12so22200484wrq.6 for <48575@debbugs.gnu.org>; Fri, 21 May 2021 13:26:53 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=9zISe9rFLbchuImfNcM0SnLo2CE31AzSoJPIaCp/pnM=; b=DnPYLMx0hTadBP+Fw9i9E+usH3rplIouF/pgiyPDW0RmT2DWoOEUTXMb34NGrrjo5P xIh17hs+BURo6f2OVNYxwbYwitFUNNNAqxLmKVF1E+FOFdac5+uraw8pHh90DDsDDJj9 AysdLwoa62JTL1DcH7foFJz7RDFjW5KuXpe2iNSYBXibjpMHWZ3OsWPz0BZ7p7hfmRt2 0y/FF+tEezt/X81T6amZyY9fbEw8nbdJ8wxdZtlRrAYJ9n5I9aObjYZkPFkYBlELY7Iu BpBxsy7GEqVpVb+cY2Bbxk6rfvVYwYg/q+zvrWVeYBCXbd+qf0ZPvuEzXwvfpt77xbSR 138g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=9zISe9rFLbchuImfNcM0SnLo2CE31AzSoJPIaCp/pnM=; b=WhfdC9WGoTp9aXFKCFEm4IVcSX5CeccqeZK1a8iRsmHoNRn6XAa2iE3zzPBun+j8Zi A/zIQlGveTSscLtqvtWLWdS/FbQPBys3XpO3AnuVLJ8Rma7Y4LzFdpeIxBlDilMH24vl 2GmD8WKMtIgTaM4z9p44qY9UQqlX98xawWAUzEkPVcYyjUn30KCpGMPgInM+9DrMGuUn PTXqav0Z6rXSmGQBKhSRAPOBhgH8PVJcTndGMxYIo6QOTbOVk2BFJm8LSsALngJV3GGA NtVHhv/5BtmFMNLgl/MCKunThhev4ot1b0YSgPfnjGrZormYALdFjefHkczqNcVZaepD tqSA== X-Gm-Message-State: AOAM532zvKZuZqfCMnnALlvJuU2afr0Oi98vOHsMLBv+Z7qRo7yY7XHM fD1nuh3AsmfSuoGkYbFJYRYZaIvbjjE= X-Google-Smtp-Source: ABdhPJz4sbaumD4bC7PLg4936vsAr/SlQRcD+u+/rA49xumKUVn9cDtRmcnufseb69Yopo+b2p3BYA== X-Received: by 2002:a5d:4c49:: with SMTP id n9mr11037625wrt.417.1621628807912; Fri, 21 May 2021 13:26:47 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id j18sm542711wmq.27.2021.05.21.13.26.47 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 21 May 2021 13:26:47 -0700 (PDT) From: zimoun Date: Fri, 21 May 2021 22:26:00 +0200 Message-Id: <20210521202622.26591-28-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210521202622.26591-1-zimon.toutoune@gmail.com> References: <20210521202622.26591-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-organismdbi): Move from here... * gnu/packages/bioconductor.scm (r-organismdbi): ...to here. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 32 -------------------------------- 2 files changed, 32 insertions(+), 32 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7717c821b9..c63d39dc9c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2940,6 +2940,38 @@ mzIdentML files with the drawback of having less pretty output than a vendor specific parser.") (license license:gpl2+))) +(define-public r-organismdbi + (package + (name "r-organismdbi") + (version "1.32.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "OrganismDbi" version)) + (sha256 + (base32 + "1mklnzs0d0ygcdibwfnk5xqr8ln6wpa00qcaw9c68m342kql0jqw")))) + (properties `((upstream-name . "OrganismDbi"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocmanager" ,r-biocmanager) + ("r-dbi" ,r-dbi) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-graph" ,r-graph) + ("r-iranges" ,r-iranges) + ("r-rbgl" ,r-rbgl) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/OrganismDbi") + (synopsis "Software to enable the smooth interfacing of database packages") + (description "The package enables a simple unified interface to several +annotation packages each of which has its own schema by taking advantage of +the fact that each of these packages implements a select methods.") + (license license:artistic2.0))) + (define-public r-pcamethods (package (name "r-pcamethods") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0c7b3d602f..1c90700c95 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9039,38 +9039,6 @@ chromosome region or transcript models of lincRNA genes.") ;; No version specified (license license:lgpl3+))) -(define-public r-organismdbi - (package - (name "r-organismdbi") - (version "1.32.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "OrganismDbi" version)) - (sha256 - (base32 - "1mklnzs0d0ygcdibwfnk5xqr8ln6wpa00qcaw9c68m342kql0jqw")))) - (properties `((upstream-name . "OrganismDbi"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-biocmanager" ,r-biocmanager) - ("r-dbi" ,r-dbi) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicranges" ,r-genomicranges) - ("r-graph" ,r-graph) - ("r-iranges" ,r-iranges) - ("r-rbgl" ,r-rbgl) - ("r-s4vectors" ,r-s4vectors))) - (home-page "https://bioconductor.org/packages/OrganismDbi") - (synopsis "Software to enable the smooth interfacing of database packages") - (description "The package enables a simple unified interface to several -annotation packages each of which has its own schema by taking advantage of -the fact that each of these packages implements a select methods.") - (license license:artistic2.0))) - (define-public r-biovizbase (package (name "r-biovizbase")