From patchwork Fri May 21 20:25:57 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 29491 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 403BD27BC81; Fri, 21 May 2021 21:32:58 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id C6D8E27BC78 for ; Fri, 21 May 2021 21:32:57 +0100 (BST) Received: from localhost ([::1]:45546 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lkBpJ-0003LY-0x for patchwork@mira.cbaines.net; Fri, 21 May 2021 16:32:57 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:52526) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lkBkh-0004kJ-8m for guix-patches@gnu.org; Fri, 21 May 2021 16:28:11 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:54503) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lkBkg-0002zv-Vn for guix-patches@gnu.org; Fri, 21 May 2021 16:28:10 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lkBkg-0000Ns-TF for guix-patches@gnu.org; Fri, 21 May 2021 16:28:10 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#48575] [PATCH 25/50] gnu: r-complexheatmap: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 21 May 2021 20:28:10 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48575 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48575@debbugs.gnu.org Cc: zimoun Received: via spool by 48575-submit@debbugs.gnu.org id=B48575.16216288511104 (code B ref 48575); Fri, 21 May 2021 20:28:10 +0000 Received: (at 48575) by debbugs.gnu.org; 21 May 2021 20:27:31 +0000 Received: from localhost ([127.0.0.1]:37745 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBk2-0000Hd-Fh for submit@debbugs.gnu.org; Fri, 21 May 2021 16:27:30 -0400 Received: from mail-wm1-f45.google.com ([209.85.128.45]:42543) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBjQ-0000A1-4O for 48575@debbugs.gnu.org; Fri, 21 May 2021 16:26:52 -0400 Received: by mail-wm1-f45.google.com with SMTP id f75-20020a1c1f4e0000b0290171001e7329so7779568wmf.1 for <48575@debbugs.gnu.org>; Fri, 21 May 2021 13:26:52 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=inq9neC5ix32A8akE1Q/XEP7EZ3hAz0EhOMcAMgLS4E=; b=dhaVv47tA9Pj7EhizrNQ2QUsJemzISGR/peAPD1MrF2JMnFQhvkln4CqwcT2cDzpMx BU7HAK4sasPN20k2EkRxA1t7qwj9unzRrVRoCs/gLP0YmbAUpuYJe2MWwoNxv0/4xAjX chXplhNiUsxE+VEQt69DRCgnS2ejS5B1Joy/E7LDDu4Yup+Ft7U8l1x+HDZvK0OUoAWv UsYd8KWRmmbTaB763z0C1Wr0kNSdGUbgrRyw+iofKEiJsY/MzSwmeYCNNfaew4jJjAUl pJh5V3tGd/pu9X9dQ5r9X8XiFFc0P3+3/fpzwhL3w2Yp6lqDrgyiJS/IVkx+xtQgDVnO 4hLw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=inq9neC5ix32A8akE1Q/XEP7EZ3hAz0EhOMcAMgLS4E=; b=pGXw/cOpV2MlXTbPmA3O8a4SSJQ7zDXJ/sqUvnHJ0KSxrLZdAZuy+K3N4EJRmucGym qaK4sBoUFexC5wz2flb/ZHXom3Rb26wDLOdvI98iYZCOgCaj0l/VL1mnIA2R+MQft4+o HNaue9b3ELxgYvbbdeiShwz7jtfqBqn6ugHvPbv2TlmDIMD1mPo7FurH2kUXD7rSTbz/ zM2pwx+c7gRA66J/HGf94WhdDzUAznippaz6HFBEVyWEPTA6zHhXXS4DCXegvUAwrW9K LDBE5duFaKB0M3cLfl9woCu7UjnKIEIMoGBJU7DsdmYV5WPSqqkOUy8Lxl6qbWcVqoOH WnAQ== X-Gm-Message-State: AOAM531LG934D6yLs3za3RaAAQ5InfsetUuTvztj6t/1FxDaWyAyE2zX fLo0Veh/YhfYDhmcBQI9UDP4d6FnXGQ= X-Google-Smtp-Source: ABdhPJycj+jsB2OZeYl19jT2wq04GPHYXs2hPDvVikcIF+nPEM588Hb8mmyMkJ9NTdj5H18Ee06hOQ== X-Received: by 2002:a05:600c:4eca:: with SMTP id g10mr10858172wmq.187.1621628806656; Fri, 21 May 2021 13:26:46 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id j18sm542711wmq.27.2021.05.21.13.26.46 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 21 May 2021 13:26:46 -0700 (PDT) From: zimoun Date: Fri, 21 May 2021 22:25:57 +0200 Message-Id: <20210521202622.26591-25-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210521202622.26591-1-zimon.toutoune@gmail.com> References: <20210521202622.26591-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-complexheatmap): Move from here... * gnu/packages/bioconductor.scm (r-complexheatmap): ...to here. --- gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 39 --------------------------------- 2 files changed, 39 insertions(+), 39 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f6d3ef897a..92eb5a0906 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2082,6 +2082,45 @@ genome data packages and support for efficient SNP representation.") analysis.") (license license:artistic2.0))) +(define-public r-complexheatmap + (package + (name "r-complexheatmap") + (version "2.6.2") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ComplexHeatmap" version)) + (sha256 + (base32 + "1nx1xxpq8zrvi990v9fmvx3msl85pdz5dp1gp6m78q6i4s2alg5x")))) + (properties + `((upstream-name . "ComplexHeatmap"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cairo" ,r-cairo) + ("r-circlize" ,r-circlize) + ("r-clue" ,r-clue) + ("r-colorspace" ,r-colorspace) + ("r-digest" ,r-digest) + ("r-getoptlong" ,r-getoptlong) + ("r-globaloptions" ,r-globaloptions) + ("r-iranges" ,r-iranges) + ("r-matrixstats" ,r-matrixstats) + ("r-png" ,r-png) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page + "https://github.com/jokergoo/ComplexHeatmap") + (synopsis "Making Complex Heatmaps") + (description + "Complex heatmaps are efficient to visualize associations between +different sources of data sets and reveal potential structures. This package +provides a highly flexible way to arrange multiple heatmaps and supports +self-defined annotation graphics.") + (license license:gpl2+))) + (define-public r-deseq (package (name "r-deseq") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index daf1fb6958..acaf41acc4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9028,45 +9028,6 @@ distributed by file or by range. User defined mapper and reducer functions provide added flexibility for data combination and manipulation.") (license license:artistic2.0))) -(define-public r-complexheatmap - (package - (name "r-complexheatmap") - (version "2.6.2") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "ComplexHeatmap" version)) - (sha256 - (base32 - "1nx1xxpq8zrvi990v9fmvx3msl85pdz5dp1gp6m78q6i4s2alg5x")))) - (properties - `((upstream-name . "ComplexHeatmap"))) - (build-system r-build-system) - (propagated-inputs - `(("r-cairo" ,r-cairo) - ("r-circlize" ,r-circlize) - ("r-clue" ,r-clue) - ("r-colorspace" ,r-colorspace) - ("r-digest" ,r-digest) - ("r-getoptlong" ,r-getoptlong) - ("r-globaloptions" ,r-globaloptions) - ("r-iranges" ,r-iranges) - ("r-matrixstats" ,r-matrixstats) - ("r-png" ,r-png) - ("r-rcolorbrewer" ,r-rcolorbrewer) - ("r-s4vectors" ,r-s4vectors))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page - "https://github.com/jokergoo/ComplexHeatmap") - (synopsis "Making Complex Heatmaps") - (description - "Complex heatmaps are efficient to visualize associations between -different sources of data sets and reveal potential structures. This package -provides a highly flexible way to arrange multiple heatmaps and supports -self-defined annotation graphics.") - (license license:gpl2+))) - (define-public r-dirichletmultinomial (package (name "r-dirichletmultinomial")