From patchwork Fri May 21 20:25:51 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 29484 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C523727BC78; Fri, 21 May 2021 21:31:54 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id B0EDE27BC81 for ; Fri, 21 May 2021 21:31:53 +0100 (BST) Received: from localhost ([::1]:43990 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lkBoG-0002Bg-Tl for patchwork@mira.cbaines.net; Fri, 21 May 2021 16:31:52 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:52476) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lkBke-0004cN-T6 for guix-patches@gnu.org; Fri, 21 May 2021 16:28:08 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:54497) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lkBke-0002yI-L5 for guix-patches@gnu.org; Fri, 21 May 2021 16:28:08 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lkBke-0000N8-Hs for guix-patches@gnu.org; Fri, 21 May 2021 16:28:08 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#48575] [PATCH 19/50] gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 21 May 2021 20:28:08 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 48575 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 48575@debbugs.gnu.org Cc: zimoun Received: via spool by 48575-submit@debbugs.gnu.org id=B48575.16216288481059 (code B ref 48575); Fri, 21 May 2021 20:28:08 +0000 Received: (at 48575) by debbugs.gnu.org; 21 May 2021 20:27:28 +0000 Received: from localhost ([127.0.0.1]:37733 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBjz-0000Gv-VD for submit@debbugs.gnu.org; Fri, 21 May 2021 16:27:28 -0400 Received: from mail-wm1-f45.google.com ([209.85.128.45]:35343) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lkBjN-000099-GR for 48575@debbugs.gnu.org; Fri, 21 May 2021 16:26:50 -0400 Received: by mail-wm1-f45.google.com with SMTP id z19-20020a7bc7d30000b029017521c1fb75so8082979wmk.0 for <48575@debbugs.gnu.org>; Fri, 21 May 2021 13:26:49 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=TYBWK23ZB338xbEjAJUqAauS/ByH0/h8gzSwsfy0fXs=; b=DU2i2uU8Be2kwijcWvYvxQhXSOBb3gHdxqaJt5fqEvUggvUXelLWzAmOnj+X9bf9UJ 5WGRb8tpbt1OSqWJSAbqyTo6WcLEesmYwWGtxHewpiWSPk9uxlR3NZY0oS0H5hQ+LBxA OVc8XAQNYO/DYwsnIkfh4hTYJgTGiwOxPvZysBASdWxOgRg5zAX96nbBys/Wq8sqq54N S6KGMeIikRTxNufjDG/Qja2/ok2QcJe4TyQiY3abAfdW2JEmjV+i1yA0FHbFUgZewCdX 3qX/fNQPx3E5t4iAF09lQ3g0Cw2tfTHwPRTyCDz3NFmEzsyOlBeviXhZrPgtw8fYmaIU yV2A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=TYBWK23ZB338xbEjAJUqAauS/ByH0/h8gzSwsfy0fXs=; b=aIpVzD4TpyXAy+fe86LqHH+s5uTX2SyDruWHkI4ni9evHPu8/BkgAcFNVHDVShEcqM 3VmhEv5jzYXsGkqlz4Iar4cethuq1rLP+xuwgo9vSY++gJaZLpEZrv4yb6OYxaurkAU0 tiUQ1+TxohRyhDgC78OrhEMgsca1fp1Rjm0QOBS1iv3MR5UXIEAMUna5OGn5eOl6ZAi9 f2XPzlRy6Vd1jNGfjpgyyOPnHUGKIGMc5u9hB2DImTi9Hbn+rTAJgZQv84ObmmKu3YPw TM7v1/nMiNa7/3A1x0csIJ3N6UxFp+USQMegrQBCsI4WUxKn2kF6B3NOgUHuUeEP3AjW h7JQ== X-Gm-Message-State: AOAM530Kw0XB1BmgVkM4CRTwuijuBEVmsRxgrLD7BfzLX7dB95clHqOS j6a+scf5hfA/PtmnRYGS6KKjT+A7kBc= X-Google-Smtp-Source: ABdhPJwkecAhyZN1byIrc7O17kGtC8/8sVeGVCczJalPUR3++TbsQQ1Xe4eDD2khsvZD7U0tEYxzfQ== X-Received: by 2002:a7b:c7ca:: with SMTP id z10mr10584061wmk.185.1621628804042; Fri, 21 May 2021 13:26:44 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id j18sm542711wmq.27.2021.05.21.13.26.43 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 21 May 2021 13:26:43 -0700 (PDT) From: zimoun Date: Fri, 21 May 2021 22:25:51 +0200 Message-Id: <20210521202622.26591-19-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210521202622.26591-1-zimon.toutoune@gmail.com> References: <20210521202622.26591-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Move from here... * gnu/packages/bioconductor.scm (r-interactivedisplaybase): ...to here. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 27 --------------------------- 2 files changed, 27 insertions(+), 27 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index beb662984d..9619ce5464 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2508,6 +2508,33 @@ the Human Protein Atlas project.") microarray data, using nearest neighbor averaging.") (license license:gpl2+))) +(define-public r-interactivedisplaybase + (package + (name "r-interactivedisplaybase") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "interactiveDisplayBase" version)) + (sha256 + (base32 + "08id2hkx4ssxj34dildx00a4j3z0nv171b7b0wl6xjks7wk6lv01")))) + (properties + `((upstream-name . "interactiveDisplayBase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-dt" ,r-dt) + ("r-shiny" ,r-shiny))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/interactiveDisplayBase") + (synopsis "Base package for web displays of Bioconductor objects") + (description + "This package contains the basic methods needed to generate interactive +Shiny-based display methods for Bioconductor objects.") + (license license:artistic2.0))) + (define-public r-limma (package (name "r-limma") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b0de0d9880..b367dcae98 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9022,33 +9022,6 @@ their variance is independent of the mean, and they are usually more sensitive and specific in detecting differential transcription.") (license license:artistic2.0))) -(define-public r-interactivedisplaybase - (package - (name "r-interactivedisplaybase") - (version "1.28.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "interactiveDisplayBase" version)) - (sha256 - (base32 - "08id2hkx4ssxj34dildx00a4j3z0nv171b7b0wl6xjks7wk6lv01")))) - (properties - `((upstream-name . "interactiveDisplayBase"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-dt" ,r-dt) - ("r-shiny" ,r-shiny))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/interactiveDisplayBase") - (synopsis "Base package for web displays of Bioconductor objects") - (description - "This package contains the basic methods needed to generate interactive -Shiny-based display methods for Bioconductor objects.") - (license license:artistic2.0))) - (define-public r-annotationhub (package (name "r-annotationhub")